Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55572 | Canola | nucleus | 52.77 | 69.27 |
| CDX69452 | Canola | cytosol | 64.26 | 66.96 |
| Bra008624.1-P | Field mustard | cytosol | 63.62 | 66.3 |
| CDY67200 | Canola | cytosol, nucleus | 19.36 | 65.0 |
| AT1G31814.1 | Thale cress | cytosol | 54.47 | 54.12 |
| VIT_19s0090g01700.t01 | Wine grape | cytosol | 23.62 | 28.83 |
| KRH73863 | Soybean | nucleus | 31.06 | 28.13 |
| KRH46301 | Soybean | cytosol | 30.43 | 26.19 |
| KRG98570 | Soybean | cytosol, nucleus, plastid | 30.43 | 26.05 |
| AT5G48385.1 | Thale cress | cytosol | 25.11 | 21.15 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 22.98 | 20.3 |
| AT4G14900.1 | Thale cress | nucleus | 21.91 | 19.36 |
| AT4G00650.1 | Thale cress | plastid | 10.64 | 15.92 |
| AT5G27230.1 | Thale cress | nucleus | 22.55 | 11.18 |
| PGSC0003DMT400036725 | Potato | nucleus | 2.55 | 4.41 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831493 | ProteinID:AED92279.1 | ArrayExpress:AT5G16320 | EnsemblPlantsGene:AT5G16320 | RefSeq:AT5G16320 |
| TAIR:AT5G16320 | RefSeq:AT5G16320-TAIR-G | EnsemblPlants:AT5G16320.1 | TAIR:AT5G16320.1 | EMBL:AY075663 | EMBL:AY101525 |
| Unigene:At.31690 | ProteinID:BAB09599.1 | ncoils:Coil | ProteinID:DAA05285.1 | Symbol:FRL1 | InterPro:Frigida |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | RefSeq:NP_197136.1 | PFAM:PF07899 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF13 | UniProt:Q9FFF1 | UniParc:UPI00000A0B4C | SEG:seg | : |
Description
FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
Coordinates
chr5:+:5344495..5346106
Molecular Weight (calculated)
52834.0 Da
IEP (calculated)
6.682
GRAVY (calculated)
-0.422
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.