Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 2
- mitochondrion 2
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080001 | Potato | nucleus | 45.22 | 17.18 |
| PGSC0003DMT400094724 | Potato | nucleus | 48.53 | 16.92 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 31.25 | 15.37 |
| PGSC0003DMT400080000 | Potato | nucleus | 41.18 | 14.87 |
| CDY67200 | Canola | cytosol, nucleus | 4.04 | 7.86 |
| Os03t0193225-01 | Rice | plasma membrane | 10.66 | 5.64 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 6.99 | 4.8 |
| KRH73863 | Soybean | nucleus | 8.82 | 4.62 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 8.09 | 4.54 |
| PGSC0003DMT400077344 | Potato | nucleus | 8.09 | 4.28 |
| KRH46301 | Soybean | cytosol | 8.09 | 4.03 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 7.35 | 4.02 |
| EER92706 | Sorghum | plastid | 7.35 | 3.9 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 6.99 | 3.82 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 6.99 | 3.82 |
| Zm00001d028173_P002 | Maize | plastid | 6.99 | 3.71 |
| PGSC0003DMT400071153 | Potato | nucleus | 7.35 | 3.67 |
| KRG98570 | Soybean | cytosol, nucleus, plastid | 7.35 | 3.64 |
| PGSC0003DMT400047832 | Potato | nucleus | 6.99 | 3.57 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 6.62 | 3.52 |
| CDX69452 | Canola | cytosol | 5.51 | 3.33 |
| Bra008624.1-P | Field mustard | cytosol | 5.51 | 3.33 |
| PGSC0003DMT400053214 | Potato | cytosol | 6.62 | 3.3 |
| CDY55572 | Canola | nucleus | 4.04 | 3.07 |
| PGSC0003DMT400065090 | Potato | nucleus | 6.62 | 2.96 |
| AT1G31814.1 | Thale cress | cytosol | 4.78 | 2.75 |
| CDY67951 | Canola | cytosol | 4.41 | 2.6 |
| Bra023207.1-P | Field mustard | cytosol | 4.41 | 2.6 |
| AT5G16320.1 | Thale cress | nucleus | 4.41 | 2.55 |
| CDY12290 | Canola | cytosol | 3.68 | 2.25 |
| VIT_19s0090g01710.t01 | Wine grape | cytosol | 0.74 | 0.74 |
| PGSC0003DMT400084922 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036725 | EnsemblPlantsGene:PGSC0003DMG402014164 | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF3 | PGSC:PGSC0003DMG402014164 | SEG:seg |
| UniParc:UPI00029569CB | UniProt:M1B450 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402014164]
Coordinates
chr3:+:57496364..57498639
Molecular Weight (calculated)
28591.6 Da
IEP (calculated)
9.786
GRAVY (calculated)
-0.442
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEKEIGGF DKQIGKNMAQ KRKSDETESS RRFRNREAKR SCIPPWLRQQ RVDAHANNNN TLPEGRTTGH LHGYTVSSSV LRGPSAGSIH ENIAGSLVGT
101: VGGVAMGVAG AGILASADGI HAGISAGTDV VQQEGPYAGG HGGTLVDSTP GQIGSHTGQL YGRHGNAAVM IVWLHAAMLI GHHRTWKLEG SKGLPNTMHT
201: DAYRSPPYLE GSTRLPNAIS GDAAGRSSAS DIYQVADTVT ASELHMSRGL RTVDTVSSAA SAHPSSNLYR PK
101: VGGVAMGVAG AGILASADGI HAGISAGTDV VQQEGPYAGG HGGTLVDSTP GQIGSHTGQL YGRHGNAAVM IVWLHAAMLI GHHRTWKLEG SKGLPNTMHT
201: DAYRSPPYLE GSTRLPNAIS GDAAGRSSAS DIYQVADTVT ASELHMSRGL RTVDTVSSAA SAHPSSNLYR PK
001: MVRVPPFKPS KEGDPKLETF KDNLDSIVRF GIGEELRVSS TPLDAMEHQS PAKDLESAVA NQSDLKGKTS KYPLLDLSFK DSVAGFDSLD LFWRTPNFVG
101: YIEEPLDIYL RDSFNYVGSF RHVSVAAEPS VKESESVVSE PFVSDSSISC HTEVNMRDDH QKHKGEKAKK KTLNDEIVSL SSCRRAEEKK CDDEEDKEGV
201: DKSVDDSLST EEATMSKFCF FCVDFLANLS SLNQQVLDKK QQKNMATKRR SDETKTCSTS NKKNKNVLVS PRRLEAETWL SLPYPYHHYP IKYQIMQSSI
301: QMQHSGIGTE PLVTFVGQNR LNQPIGGIVG LSEFPQVIQE LYSLPNAPPL PNLNLQIHPQ PHLGGRVRKE QP
101: YIEEPLDIYL RDSFNYVGSF RHVSVAAEPS VKESESVVSE PFVSDSSISC HTEVNMRDDH QKHKGEKAKK KTLNDEIVSL SSCRRAEEKK CDDEEDKEGV
201: DKSVDDSLST EEATMSKFCF FCVDFLANLS SLNQQVLDKK QQKNMATKRR SDETKTCSTS NKKNKNVLVS PRRLEAETWL SLPYPYHHYP IKYQIMQSSI
301: QMQHSGIGTE PLVTFVGQNR LNQPIGGIVG LSEFPQVIQE LYSLPNAPPL PNLNLQIHPQ PHLGGRVRKE QP
Arabidopsis Description
WRKY family transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9FL30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.