Factsheet for PGSC0003DMT400080000

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036725
PGSC0003DMT400037427
PGSC0003DMT400048982
PGSC0003DMT400052836
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	PGSC0003DMT400048982	AT2G06005.1	19429606
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400052836	AT4G17060.1	19429606
AT4G00650.1	PGSC0003DMT400036725	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080001	Potato	nucleus	47.01	49.44
PGSC0003DMT400094724	Potato	nucleus	45.02	43.46
PGSC0003DMT400084922	Potato	cytosol	22.71	43.18
PGSC0003DMT400036725	Potato	nucleus	14.87	41.18
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	14.74	38.14
PGSC0003DMT400037427	Potato	nucleus, plastid	27.49	37.43
CDY05835	Canola	cytosol, nucleus, plastid	14.74	30.92
Bra035723.1-P	Field mustard	plastid	14.87	30.6
AT4G00650.1	Thale cress	plastid	12.22	29.3
KRH54046	Soybean	nucleus	21.51	27.36
KRH63904	Soybean	nucleus	21.78	27.29
CDY32645	Canola	nucleus	20.98	27.1
CDX71688	Canola	nucleus	20.85	26.84
Bra029192.1-P	Field mustard	nucleus, plastid	20.19	25.89
CDY38847	Canola	nucleus, plastid	20.19	25.5
VIT_19s0014g00060.t01	Wine grape	nucleus	10.09	23.97
Os03t0851400-01	Rice	extracellular	11.95	20.55
EER93089	Sorghum	plastid	11.95	19.48
PGSC0003DMT400071153	Potato	nucleus	14.08	19.45
PGSC0003DMT400053214	Potato	cytosol	13.94	19.23
PGSC0003DMT400077344	Potato	nucleus	12.88	18.87
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	12.88	18.23
TraesCS4A01G329000.1	Wheat	plastid	11.42	17.37
TraesCS5B01G543400.1	Wheat	plastid	11.95	17.27
PGSC0003DMT400047832	Potato	nucleus	11.82	16.73
TraesCS5D01G544800.1	Wheat	mitochondrion	11.42	15.33
PGSC0003DMT400065090	Potato	nucleus	11.42	14.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400080000	EnsemblPlantsGene:PGSC0003DMG400031150	EntrezGene:107062939	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	PFAM:PF07899	PGSC:PGSC0003DMG400031150	RefSeq:XP_015169712.1	SEG:seg
UniParc:UPI000294C8EB	UniProt:M1D2U2	MapMan:35.1	:	:	:

Description

Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400031150]

Coordinates

chr4:+:61677628..61680091

Molecular Weight (calculated)

83717.0 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.605

Length

753 amino acids

Sequence
(BLAST)

001: MDKPADYSAG AGARATPSLA KQLLRAEQKH QTGNSSWQQK QSELQQSPTY SQELINANLC KLSDGLSAFQ RCLGELHRHI DTIRTSIDSS VLLLSLPNNT
101: TPSAPALPAP APAAEPSDPS EEEEEEEEEE EEEEEEEEEE EEEEQQLKSP PRSQPKSSKE GEEEKQQLKS PHRPEPELFR IELKSPPRPE PKSFRIELKS
201: SSPRSSSEVK ILCETMNSHG LRKYMIRRLS CLKTLQQKVP KALKLSPNPA RLILEAIGMF YTQGSNTYVE GSPLITERRA LVLLLECFLR MIGEGEGEGS
301: SVEIENGEKE EAGQAALAWY RRLNFEGGIL KAQEIDARGL LLFIGCFGIP QAFRNEDIKD LLHQSYIKMI SSSVRRSSVL MAKIPEIIEG MLNQNMVVDA
401: VYFTFCFGLE DRFNPQRLLT SFLHESEVSL CNKIQTFEQN KGSKDSALQE IIGAKRRYLG TLKSVIQCLG RNNIDHSKFL SEWQIGEKVI GLEKEITQFR
501: KNLKDEQRMV QKRKNDETEW LKNKEMKHSH FPNPWTPQQR VVNHVDRSNT LLEGDRTAGH FYGHSVCPSV YHGPVAGSIH ENIVGSLAGP MGGVAMAVPG
601: AGISAGTDVV LSRVDGSLRD ATVYDRLPSH RYAYRPSSYL EGPNTIAGDA YSRPPPYMQN SMGLPNTTPG DVNRPPPYSQ GSAGLPNIIT GDFYRPPPHL
701: GGSTQLSNTI PPPYQLAATG PTTELYRSIG SQAVDAVPSG AIAHPSSSLY WQR

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.