Factsheet for PGSC0003DMT400048982

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037427
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT2G06005.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT2G06005.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT2G06005.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT2G06005.1	PGSC0003DMT400094724	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009100.1.1	Tomato	plasma membrane	83.05	14.08
VIT_11s0016g01110.t01	Wine grape	plasma membrane	76.27	12.75
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	76.27	12.64
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	72.88	12.08
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	69.49	11.78
CDY51843	Canola	cytosol, peroxisome, plasma membrane	67.8	11.46
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	67.8	11.46
CDX70932	Canola	cytosol, mitochondrion, peroxisome	67.8	11.46
TraesCS7D01G165500.3	Wheat	plasma membrane	69.49	11.14
TraesCS7A01G163400.1	Wheat	plasma membrane	67.8	10.87
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	67.8	10.87
EES05887	Sorghum	peroxisome	64.41	10.73
Os02t0778300-01	Rice	plasma membrane	64.41	10.67
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	62.71	10.42
Zm00001d018275_P001	Maize	peroxisome	64.41	10.03
TraesCS6A01G336900.1	Wheat	plasma membrane	57.63	9.66
TraesCS6B01G367400.1	Wheat	plasma membrane	57.63	9.63
TraesCS6D01G317300.1	Wheat	plasma membrane	57.63	9.58
Bra015180.1-P	Field mustard	plasma membrane	59.32	9.51
HORVU6Hr1G081380.8	Barley	plasma membrane	47.46	7.18
CDY64735	Canola	cytosol, nucleus, plasma membrane	59.32	6.47
CDY33404	Canola	plasma membrane	59.32	6.47
GSMUA_Achr8P22670_001	Banana	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400048982	EnsemblPlantsGene:PGSC0003DMG400019032	ncoils:Coil	PGSC:PGSC0003DMG400019032	UniParc:UPI000296FA3B	UniProt:M1BN39
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019032]

Coordinates

chr7:-:38885240..38886702

Molecular Weight (calculated)

7069.5 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.931

Length

59 amino acids

Sequence
(BLAST)

1: MQRIRSTNNQ YVEENERLRT ILGEWSCRAA KLERALELER ISNLELQKKI TTLKSQSYE

Best Arabidopsis Sequence Match ( AT5G20580.2 )
(BLAST)

001: MANDRRASSV NPSTEQDNAM FLDILHEAPL FGHRESRSLV GSCIYLIILA GYAILAAGAP WILQSVDYLI PSLLCSCNVA LLMLTGMFQQ YFVNQVQKIR
101: LQGYYSFSQK LKHVVRLPFA IMAYGTASML LFMEWRPYVS VLPIFTVQRF IMSVEAISAA SFMIVFVGYV RQYNSVNSQP DVLNSLYSPL QPAALEGLRY
201: HEAGRLSDQQ MALLQYQREN LHYLSEEILR LQESLSKYET NGSSTPQVDL AHLVATRDQE LRTLSAEVDQ LHSELNLARS LISERDREIQ HVRNTNNQYV
301: AENERLRAIL GEWSMRAAKL ERALEVERIS NIELRKKVSA LRDQRQVA

Arabidopsis Description

Putative uncharacterized protein At5g20580 [Source:UniProtKB/TrEMBL;Acc:Q0WP45]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.