Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G06005.1 | CDX71688 | AT4G00650.1 | 19429606 |
| AT2G06005.1 | CDY05835 | AT4G00650.1 | 19429606 |
| AT2G06005.1 | CDY32645 | AT4G00650.1 | 19429606 |
| AT2G06005.1 | CDY38847 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64735 | Canola | cytosol, nucleus, plasma membrane | 98.89 | 98.89 |
| Bra015180.1-P | Field mustard | plasma membrane | 64.33 | 94.57 |
| AT2G06005.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 57.67 | 87.89 |
| VIT_11s0016g01110.t01 | Wine grape | plasma membrane | 46.95 | 71.95 |
| CDX70932 | Canola | cytosol, mitochondrion, peroxisome | 45.47 | 70.49 |
| CDY51843 | Canola | cytosol, peroxisome, plasma membrane | 45.1 | 69.91 |
| KRH12539 | Soybean | endoplasmic reticulum, peroxisome, plastid | 45.66 | 69.38 |
| KRH37493 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 45.29 | 68.82 |
| Solyc12g009100.1.1 | Tomato | plasma membrane | 43.44 | 67.53 |
| GSMUA_Achr8P22670_001 | Banana | plasma membrane | 19.59 | 62.35 |
| TraesCS6B01G367400.1 | Wheat | plasma membrane | 39.0 | 59.77 |
| Os02t0778300-01 | Rice | plasma membrane | 39.19 | 59.55 |
| PGSC0003DMT400048982 | Potato | cytosol | 6.47 | 59.32 |
| TraesCS6A01G336900.1 | Wheat | plasma membrane | 38.45 | 59.09 |
| TraesCS6D01G317300.1 | Wheat | plasma membrane | 38.45 | 58.59 |
| TraesCS7B01G069200.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 38.82 | 57.07 |
| EES05887 | Sorghum | peroxisome | 37.34 | 57.06 |
| TraesCS7D01G165500.3 | Wheat | plasma membrane | 38.45 | 56.52 |
| TraesCS7A01G163400.1 | Wheat | plasma membrane | 38.26 | 56.25 |
| Zm00001d018275_P001 | Maize | peroxisome | 37.34 | 53.3 |
| HORVU6Hr1G081380.8 | Barley | plasma membrane | 37.15 | 51.54 |
Protein Annotations
| EnsemblPlants:CDY33404 | EnsemblPlantsGene:GSBRNA2T00054288001 | GO:A0A078H7D7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM192 | ncoils:Coil | PANTHER:PTHR31592 | PFAM:PF14802 | ProteinID:CDY33404 | ProteinID:CDY33404.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF46BC | UniProt:A0A078H7D7 | MapMan:35.1 | : |
Description
BnaA07g04350DBnaA07g04350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7D7]
Coordinates
chrLK032313:+:307672..312148
Molecular Weight (calculated)
61858.7 Da
IEP (calculated)
6.843
GRAVY (calculated)
-0.235
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTERRPMTN EENAMFLDIL QEAPLFGHRK SRSLVGSYLY LILLAGYAVL AAGAPWIFHH LHHLTPSLLC CCDVALLILT GIFQQYFVFQ VQKIRLQGYY
101: SFSQKLKHVV RLPFAIASYG TAAMLLVIVW DPQISILSTS SLQRIIMIAE SVCAGFFMSL YIGYVHQYNS VNSRPDVLKS LYSPLQPSSS MDGLRYYEGR
201: LSDQQTALLQ YQRENLHFLS EEILSLQEKL SKYEQSDDGS APQVDLAHLL ASRDQELRTL SAEMNQLQTE LRLARSLIAE RDAEVQRVNN TNSQYIEENE
301: RLRAILSEWS MRAANLERAL EVERMSNSEL QKEVAGGRRK QQMVETCEQP PFMEPPPSSR AEEPPSWDEL YKINLMPSEL FLKFRKELQG LRVGVNLELY
401: NEPTNDYHAK LVLKPLSPER KWKFIYEPLH QEVRVLSKKI PLTRFLNLQV GVGHNFQMNA MGWKWKLTSC LGGDGVSRIR NKTTLGLTPG VDLRFGWRAD
501: FVLPEVTGAL GTEEPLFNMS SGRLEASLDR VEAILTHSEY L
101: SFSQKLKHVV RLPFAIASYG TAAMLLVIVW DPQISILSTS SLQRIIMIAE SVCAGFFMSL YIGYVHQYNS VNSRPDVLKS LYSPLQPSSS MDGLRYYEGR
201: LSDQQTALLQ YQRENLHFLS EEILSLQEKL SKYEQSDDGS APQVDLAHLL ASRDQELRTL SAEMNQLQTE LRLARSLIAE RDAEVQRVNN TNSQYIEENE
301: RLRAILSEWS MRAANLERAL EVERMSNSEL QKEVAGGRRK QQMVETCEQP PFMEPPPSSR AEEPPSWDEL YKINLMPSEL FLKFRKELQG LRVGVNLELY
401: NEPTNDYHAK LVLKPLSPER KWKFIYEPLH QEVRVLSKKI PLTRFLNLQV GVGHNFQMNA MGWKWKLTSC LGGDGVSRIR NKTTLGLTPG VDLRFGWRAD
501: FVLPEVTGAL GTEEPLFNMS SGRLEASLDR VEAILTHSEY L
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
Arabidopsis Description
FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.