Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035723.1-P | Field mustard | plastid | 100.0 | 98.09 |
| CDX71688 | Canola | nucleus | 92.76 | 56.92 |
| AT4G00650.1 | Thale cress | plastid | 48.47 | 55.41 |
| CDY32645 | Canola | nucleus | 69.36 | 42.71 |
| CDY38847 | Canola | nucleus, plastid | 69.08 | 41.61 |
| VIT_19s0014g00030.t01 | Wine grape | cytosol, golgi, nucleus | 32.03 | 39.52 |
| Solyc03g117910.2.1 | Tomato | plastid | 25.07 | 26.09 |
| PGSC0003DMT400084922 | Potato | cytosol | 27.3 | 24.75 |
| KRH54046 | Soybean | nucleus | 35.1 | 21.28 |
| KRH63904 | Soybean | nucleus | 34.82 | 20.8 |
| Solyc03g117930.2.1 | Tomato | nucleus | 33.7 | 20.58 |
| Solyc12g042440.1.1 | Tomato | nucleus, plastid | 26.46 | 17.37 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 26.74 | 17.36 |
| Os03t0851400-01 | Rice | extracellular | 21.17 | 17.35 |
| EER93089 | Sorghum | plastid | 20.61 | 16.02 |
| CDY55572 | Canola | nucleus | 15.88 | 15.92 |
| CDY12290 | Canola | cytosol | 18.94 | 15.28 |
| PGSC0003DMT400080001 | Potato | nucleus | 30.36 | 15.22 |
| TraesCS4A01G329000.1 | Wheat | plastid | 20.33 | 14.75 |
| Solyc04g072200.1.1 | Tomato | cytosol | 29.53 | 14.74 |
| PGSC0003DMT400080000 | Potato | nucleus | 30.92 | 14.74 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 21.17 | 14.29 |
| CDX69452 | Canola | cytosol | 17.83 | 14.19 |
| CDY67951 | Canola | cytosol | 18.11 | 14.1 |
| CDY19713 | Canola | cytosol | 11.7 | 13.82 |
| Solyc06g074450.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 22.01 | 13.81 |
| CDY05684 | Canola | cytosol | 19.78 | 13.73 |
| CDY48750 | Canola | cytosol | 20.06 | 13.66 |
| TraesCS5B01G543400.1 | Wheat | plastid | 19.78 | 13.63 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 20.61 | 13.19 |
| PGSC0003DMT400094724 | Potato | nucleus | 28.13 | 12.95 |
| CDY00066 | Canola | cytosol | 19.22 | 12.92 |
| CDX99994 | Canola | peroxisome | 11.42 | 12.28 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 17.55 | 12.07 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 17.55 | 12.0 |
| CDY38318 | Canola | nucleus | 15.88 | 10.73 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 5.85 | 9.86 |
| CDX99996 | Canola | extracellular | 4.18 | 9.32 |
| CDX86173 | Canola | cytosol | 17.55 | 7.29 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 16.43 | 6.61 |
| VIT_19s0014g00060.t01 | Wine grape | nucleus | 5.29 | 5.99 |
| Solyc03g117920.1.1 | Tomato | nucleus | 5.57 | 5.6 |
| CDX86307 | Canola | nucleus | 19.78 | 4.76 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 20.33 | 4.51 |
| CDX99995 | Canola | cytosol, nucleus, peroxisome | 5.57 | 4.18 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 5.01 | 3.76 |
| CDY67200 | Canola | cytosol, nucleus | 1.11 | 2.86 |
Protein Annotations
| EnsemblPlants:CDY05835 | EnsemblPlantsGene:GSBRNA2T00120967001 | InterPro:Frigida | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF3 | PFAM:PF07899 |
| ProteinID:CDY05835 | ProteinID:CDY05835.1 | SEG:seg | UniParc:UPI0004EDDEDF | MapMan:35.1 | : |
Description
BnaA10g05850D
Coordinates
chrLK031965:+:606094..608213
Molecular Weight (calculated)
39565.7 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.174
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFRNGSLIP AHDPSSPTIQ RGTVPTNTEI TIEQSNHPQF LKSIDDLTAF SAAVDAFKRH YDDLQSHMDY IKNAIDSSLK SKGITAESPS SRSQSPRNDA
101: SGETVAATQS PPKETCETVA EKVERLCELM CSKGLRRYMY SNISDRAKLI EELPAALKLA KEPANFVLEC IGKFYLQGRK AYASDSHMIP ARQVSLLILE
201: SYLLMLDPKK PFDRVSIKDQ AEAAAVAWKK RMMSEGRLAA AEAMDARGLL LLIACFGIPS SFSSMDLFDL VRKSGAAEIA AALKRSPFLV PMMSGIVDSS
301: IKRGKHIEAL GMIYTFGIED RFSASSLLTS FLRMSKESFE RAKQKAQAPI AFACPFFTH
101: SGETVAATQS PPKETCETVA EKVERLCELM CSKGLRRYMY SNISDRAKLI EELPAALKLA KEPANFVLEC IGKFYLQGRK AYASDSHMIP ARQVSLLILE
201: SYLLMLDPKK PFDRVSIKDQ AEAAAVAWKK RMMSEGRLAA AEAMDARGLL LLIACFGIPS SFSSMDLFDL VRKSGAAEIA AALKRSPFLV PMMSGIVDSS
301: IKRGKHIEAL GMIYTFGIED RFSASSLLTS FLRMSKESFE RAKQKAQAPI AFACPFFTH
001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
Arabidopsis Description
FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.