Factsheet for Solyc04g072200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080001	Potato	nucleus	86.79	87.15
Solyc03g117930.2.1	Tomato	nucleus	36.16	44.22
Solyc03g117910.2.1	Tomato	plastid	20.72	43.19
Solyc03g117920.1.1	Tomato	nucleus	21.42	43.14
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	32.96	41.43
Solyc12g042440.1.1	Tomato	nucleus, plastid	28.37	37.29
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	12.93	31.96
AT4G00650.1	Thale cress	plastid	13.07	29.94
CDY05835	Canola	cytosol, nucleus, plastid	14.74	29.53
Bra035723.1-P	Field mustard	plastid	14.74	28.96
KRH63904	Soybean	nucleus	24.06	28.79
KRH54046	Soybean	nucleus	23.5	28.55
VIT_19s0014g00060.t01	Wine grape	nucleus	12.24	27.76
CDX71688	Canola	nucleus	21.42	26.32
CDY32645	Canola	nucleus	21.0	25.9
Bra029192.1-P	Field mustard	nucleus, plastid	20.86	25.55
CDY38847	Canola	nucleus, plastid	21.14	25.5
EER93089	Sorghum	plastid	12.38	19.26
Os03t0851400-01	Rice	extracellular	11.68	19.18
Solyc09g076050.2.1	Tomato	nucleus	12.8	17.9
Solyc06g082930.2.1	Tomato	nucleus	13.07	17.57
Solyc06g007640.2.1	Tomato	nucleus	12.66	16.98
Solyc11g071340.1.1	Tomato	nucleus	10.85	16.28
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	11.68	15.79
TraesCS4A01G329000.1	Wheat	plastid	10.57	15.35
TraesCS5B01G543400.1	Wheat	plastid	10.71	14.78
Solyc04g008840.2.1	Tomato	nucleus	11.54	13.79
TraesCS5D01G544800.1	Wheat	mitochondrion	10.57	13.55

Protein Annotations

EnsemblPlants:Solyc04g072200.1.1	EnsemblPlantsGene:Solyc04g072200.1	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	SEG:seg	UniParc:UPI0002766DD6	UniProt:K4BTK7	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4BTK7]

Coordinates

chr4:+:59199140..59201299

Molecular Weight (calculated)

79442.2 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.590

Length

719 amino acids

Sequence
(BLAST)

001: MKKTTDSAGV MPRPDSTLNT GVVRTESQQP ESQPRYSPEL IIANLSKLSD GLFAFQRCLT DLEQHIESAR TSIDSAMLLL FTPPPVTLPT PVPEPKPDPK
101: PKPEIEPEQS FESDPSEYEE EEEEEEVVEK DEVEKEEEEE EEEEEEDDDD DEEEEEEEEK GKEKEEELKS SSRSELEILC KTMDFVGLKR YIVRHMPDKD
201: GLLKQLPKAL KLSRNPARLV VQCINKGSKR HVNSSRGRAS LLAMECLLLM MGERRVVAID KRTKNEAERA ALAWRARLIA EGGIGKANER DAQGLLLLIG
301: CFGIPQGFMD RDIRFLFKAG GAMGIFGALR RSRVLMEKIP QIIQWMLNNS LVVGAIDIAY TFGMGDRYNP RKILTSFLHN SEVLYLNNTK GLEHQSIAMR
401: AGKKKHLSDL ESVGECLERH KIDPSKLLPG WQIDVRIMNL EKDIADLNMH IGEEEVAELT RHIGDQKITQ KRKLGETESS GSFSNKEMKP SLFPNPNPWP
501: PQQHRVVNHV DDSNSTLLER SGTASQIYGY SLAPSVLHQT VAGSIHQNAV GSLAGPVGGV VAMDGAGAGN LVKGGSCVGV HGGTLVDHTP SQIGSHTGQL
601: YGPPGDAHTY AYRSPSYFEA SGSMGLPNTM PGDAYRPPPY LEGSMGLPNN IPGDAYRPNQ YMKCSNGLQK NISGDANQPP PYMEGSARLP NTIPAPYQFA
701: DSVPSAALAH PSPSLYWKR

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.