Factsheet for Solyc09g076050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082270.2.1
Solyc03g111850.2.1
Solyc06g007640.2.1
Solyc06g009750.2.1
Solyc06g082930.2.1
Solyc09g055760.2.1
Solyc09g076050.2.1
Solyc11g044470.1.1
Solyc12g049230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	Solyc02g082270.2.1	AT1G20880.1	21798944
AT3G22440.1	Solyc11g044470.1.1	AT1G33470.1	21798944
AT3G22440.1	Solyc03g111850.2.1	AT2G04400.1	15714319
AT3G22440.1	Solyc06g009750.2.1	AT4G02150.1	21798944
AT3G22440.1	Solyc09g076050.2.1	AT4G14900.1	21798944
AT4G14900.1	Solyc12g049230.1.1	AT3G13990.1	21798944
AT4G14900.1	Solyc06g007640.2.1	AT5G48385.1	21798944
AT4G14900.1	Solyc06g082930.2.1	AT5G48385.1	21798944
AT4G14900.1	Solyc09g055760.2.1	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077344	Potato	nucleus	97.47	97.47
VIT_05s0020g03470.t01	Wine grape	nucleus	75.68	74.52
KRG91301	Soybean	cytosol	70.82	69.47
KRH35520	Soybean	cytosol	71.4	69.25
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	68.29	65.98
CDY46317	Canola	cytosol, nucleus, plastid	67.32	65.9
CDY34252	Canola	cytosol, nucleus, plastid	66.34	65.33
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	67.7	65.17
AT4G14900.1	Thale cress	nucleus	66.34	64.1
GSMUA_Achr2P12700_001	Banana	nucleus	52.92	55.62
GSMUA_Achr7P01520_001	Banana	nucleus	52.53	55.33
GSMUA_AchrUn_...	Banana	cytosol, nucleus	24.9	54.7
GSMUA_Achr4P28440_001	Banana	cytosol	31.13	52.12
CDY38318	Canola	nucleus	50.78	49.15
Os07t0173200-02	Rice	cytosol	45.53	43.82
Os03t0794900-01	Rice	nucleus	44.75	41.82
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	45.14	40.14
Zm00001d018911_P001	Maize	cytosol	46.11	39.04
HORVU5Hr1G104870.1	Barley	cytosol	41.63	38.56
KXG34492	Sorghum	nucleus	46.3	38.51
TraesCS5A01G434500.1	Wheat	cytosol	41.44	38.45
TraesCS5D01G442300.1	Wheat	cytosol	41.25	38.41
TraesCS5B01G437500.2	Wheat	cytosol	41.25	38.2
Solyc11g071340.1.1	Tomato	nucleus	27.43	29.44
Solyc06g007640.2.1	Tomato	nucleus	28.6	27.43
Solyc06g082930.2.1	Tomato	nucleus	27.63	26.54
HORVU3Hr1G033190.1	Barley	nucleus	5.45	26.42
Solyc04g008840.2.1	Tomato	nucleus	25.68	21.93
Solyc03g117910.2.1	Tomato	plastid	11.87	17.68
Solyc03g117930.2.1	Tomato	nucleus	19.07	16.67
Solyc12g042440.1.1	Tomato	nucleus, plastid	16.34	15.36
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	15.56	13.99
Solyc04g072200.1.1	Tomato	cytosol	17.9	12.8
Solyc03g117920.1.1	Tomato	nucleus	7.98	11.48

Protein Annotations

EnsemblPlants:Solyc09g076050.2.1	EnsemblPlantsGene:Solyc09g076050.2	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF2
PFAM:PF07899	SEG:seg	UniParc:UPI000276BF5A	UniProt:K4CVI2	MapMan:35.1	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4CVI2]

Coordinates

chr9:+:67737708..67741319

Molecular Weight (calculated)

57486.7 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.489

Length

514 amino acids

Sequence
(BLAST)

001: MGSLADPGEL DSVEPPPQQP SFDEFQRQTS LMTSCTLLWK ELSDHFTSLE QDILKKSEAL KAKIQTLDSE TKASLEVLEQ RETSMNVSLS IALQKVVENK
101: RAAILALDEG VEQPEVDDST GLLLKLKSFC VKMDSRSFWN FLTAKKKDLD SLRLEIPKAL EECVDPPRFV LESISEVFPE DKREERNERN NDLGWACVLM
201: LESLIPVMMD PVLGNERKLV TPSVKDKANE IAEIWKRSLD ERGGIENVKT PDVHTFLQHL VTFGVVKDED FDLYRKLVVG SAWRKQMPKL AISLGLGDKM
301: PEMIEELISR GQQVDAVHFT YEVGLADKFP PVPLLKAFLK DAKKAAAAIL EDPNNFGRAA HFASKKEQSA IRSVLKCIEE YKLEAEFPPE NLKKQLEQLE
401: KPKNEKKRPA AVPANKRTRA NNGGPMPPAK AGRSTNAYVS SFPVAPAFVR SPPHTQYPQA VPAYASPPTI YGNRSPPYPY SPEAAPYPGT PVNYSPYGGY
501: CNGMAPAYQQ AYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.