Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065090 | Potato | nucleus | 93.02 | 92.11 |
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 52.82 | 55.11 |
| KRH04492 | Soybean | nucleus | 44.52 | 48.46 |
| KRH58029 | Soybean | nucleus | 43.36 | 47.2 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 43.19 | 42.76 |
| Os07t0592300-01 | Rice | nucleus | 37.38 | 37.01 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 37.87 | 36.6 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 38.21 | 36.45 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 37.87 | 36.19 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 37.87 | 36.08 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 36.88 | 35.63 |
| EER99638 | Sorghum | cytosol | 36.21 | 35.33 |
| Solyc06g082930.2.1 | Tomato | nucleus | 31.4 | 35.33 |
| Solyc06g007640.2.1 | Tomato | nucleus | 30.9 | 34.7 |
| Zm00001d006752_P003 | Maize | nucleus | 37.38 | 34.35 |
| Solyc11g071340.1.1 | Tomato | nucleus | 20.76 | 26.1 |
| Solyc09g076050.2.1 | Tomato | nucleus | 21.93 | 25.68 |
| Solyc03g117910.2.1 | Tomato | plastid | 10.63 | 18.55 |
| Solyc12g042440.1.1 | Tomato | nucleus, plastid | 12.13 | 13.35 |
| Solyc03g117930.2.1 | Tomato | nucleus | 12.96 | 13.27 |
| Solyc04g072200.1.1 | Tomato | cytosol | 13.79 | 11.54 |
| Solyc06g074450.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 10.8 | 11.36 |
| Solyc03g117920.1.1 | Tomato | nucleus | 4.82 | 8.12 |
Protein Annotations
| EnsemblPlants:Solyc04g008840.2.1 | EnsemblPlantsGene:Solyc04g008840.2 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF4 |
| PFAM:PF07899 | SEG:seg | UniParc:UPI0002767326 | UniProt:K4BP40 | MapMan:35.1 | : |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4BP40]
Coordinates
chr4:-:2458319..2461577
Molecular Weight (calculated)
65952.9 Da
IEP (calculated)
5.733
GRAVY (calculated)
-0.394
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLHMMISNV PSLIEQLGKA LNDLESQENS SIDKGLIRDI LGHFRNLEAA VVNKSLELEI REKAFKEQES DAHLLIVSRE ADIAAKEHKL WDQLQELKDA
101: AVSAIVAARG DHQVESLEHT DAEDSKDIEV SSSLGITNAH HIGSEVKSSG SAADGASGKV EPRPELTQLC EQMDAKGLLH YIIERKKKMT SISEELSVAL
201: DGATEPGRLV LASLEFFYSN DESNSQDEKG KKAIHSLRQA CLVCMEAIAS LLAKAKPGAD HLLYPEIKQQ AMAIADEWKP KLATAGTDAA NQASLETEAF
301: LQLLTTFRIA SEFDEEELCK LVLAVAHNRQ GPELCRSLGL EHKMPGVIEA LIHSERQIDA ARFIHSFELS ETFPLVPLLK GYLKDLRRNA QGKGGNSGNA
401: EELAAVKAIV QCIRDYKLEA EYPLDPLLRR VAQLEKAISN DKDRSNDKKR LSGLGKHQQF KRPRVTGGTH GSIRHPNVLS IQPQSVLIER AAANNPSRLV
501: PSVLVERAAP AGLLDKYAFL STSYDYQPPS QATYPQQTYE QRSYYYPADE GIATSSYSAA PLSSSYASYS GGVLPTAAER INASSYGNYA GSGTPTAYQP
601: YM
101: AVSAIVAARG DHQVESLEHT DAEDSKDIEV SSSLGITNAH HIGSEVKSSG SAADGASGKV EPRPELTQLC EQMDAKGLLH YIIERKKKMT SISEELSVAL
201: DGATEPGRLV LASLEFFYSN DESNSQDEKG KKAIHSLRQA CLVCMEAIAS LLAKAKPGAD HLLYPEIKQQ AMAIADEWKP KLATAGTDAA NQASLETEAF
301: LQLLTTFRIA SEFDEEELCK LVLAVAHNRQ GPELCRSLGL EHKMPGVIEA LIHSERQIDA ARFIHSFELS ETFPLVPLLK GYLKDLRRNA QGKGGNSGNA
401: EELAAVKAIV QCIRDYKLEA EYPLDPLLRR VAQLEKAISN DKDRSNDKKR LSGLGKHQQF KRPRVTGGTH GSIRHPNVLS IQPQSVLIER AAANNPSRLV
501: PSVLVERAAP AGLLDKYAFL STSYDYQPPS QATYPQQTYE QRSYYYPADE GIATSSYSAA PLSSSYASYS GGVLPTAAER INASSYGNYA GSGTPTAYQP
601: YM
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.