Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04492 | Soybean | nucleus | 59.45 | 62.03 |
| KRH58029 | Soybean | nucleus | 58.58 | 61.12 |
| PGSC0003DMT400065090 | Potato | nucleus | 56.33 | 53.45 |
| Solyc04g008840.2.1 | Tomato | nucleus | 55.11 | 52.82 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 51.65 | 49.01 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 44.54 | 45.65 |
| Os07t0592300-01 | Rice | nucleus | 44.02 | 41.78 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 43.85 | 40.61 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 43.5 | 39.78 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 42.63 | 39.49 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 42.98 | 39.37 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 42.98 | 39.24 |
| EER99638 | Sorghum | cytosol | 41.94 | 39.22 |
| Zm00001d006752_P003 | Maize | nucleus | 41.94 | 36.95 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 27.73 | 30.65 |
| VIT_19s0090g01700.t01 | Wine grape | cytosol | 19.93 | 29.87 |
| VIT_19s0090g01710.t01 | Wine grape | cytosol | 13.69 | 29.15 |
| VIT_17s0000g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 14.9 | 28.86 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 23.92 | 25.89 |
| VIT_19s0014g00030.t01 | Wine grape | cytosol, golgi, nucleus | 11.09 | 21.99 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 13.86 | 18.31 |
| VIT_19s0014g00060.t01 | Wine grape | nucleus | 6.59 | 11.99 |
Protein Annotations
| EntrezGene:100262895 | wikigene:100262895 | MapMan:35.1 | ProteinID:CCB57770 | ProteinID:CCB57770.1 | ncoils:Coil |
| UniProt:F6HSW0 | EMBL:FN596246 | InterPro:Frigida | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | EntrezGene:LOC100262895 | wikigene:LOC100262895 |
| PFAM:PF07899 | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF4 | TIGR:TC60261 | UniParc:UPI00015C936A | ArrayExpress:VIT_07s0129g00610 |
| EnsemblPlantsGene:VIT_07s0129g00610 | EnsemblPlants:VIT_07s0129g00610.t01 | unigene:Vvi.13250 | RefSeq:XP_002283922 | RefSeq:XP_002283922.2 | RefSeq:XP_002283930 |
| RefSeq:XP_002283930.2 | SEG:seg | : | : | : | : |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HSW0]
Coordinates
chr7:-:15847718..15853566
Molecular Weight (calculated)
63103.3 Da
IEP (calculated)
4.830
GRAVY (calculated)
-0.537
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAEQVVSI DSASSLIEQL GRAFRDLEAF KGASENNVQW LEIEEHFGNL ETMVKKKSEE LEAREKEFDA QETEMQSVIA EREAAVAAKE QDLLDQIQEV
101: KDAAVAAIAE ARAKYQPTTS EPVDDVDNNE TKVSSSLGDT NELLTASEEK SPRKTGENVE GIPVEVKPRA ELTQFCEQMD AKGLLNFTME NRKNLSAIRE
201: ELSVALESAM EPARLVLDSL EGFYPSDQTT QQGDKKDAAL QGMRRSCLMF LEAMAALLAR ADPGADHLLN PETKQQAKAI ADEWKPKLAG AGIDAANGNS
301: LEAEAFLKLL ATFRIASEFD EEELCKLVLA VARRRQAPEL CRSLGLTHKM PGVIEVLVNG GRQIDAVHFV HAFELTERFP PVPLLKTYLK DLRRNSQGKG
401: GNMGGAGGGL GDANAQELAA LKAVIRCVEE YKLEADYALD PLQKRVAQLE KSKADKKRMG EAGKYQQPKK QRANGGFHGF RGSASGGAAA GRQAPPVFSE
501: RAAYTVERYP YAGPGPGPNT FDYPLPSQAA YIQQANDQRS YFYPQDDRVP PSSYNAAPSN YGSYMGSGLQ SSHQPYM
101: KDAAVAAIAE ARAKYQPTTS EPVDDVDNNE TKVSSSLGDT NELLTASEEK SPRKTGENVE GIPVEVKPRA ELTQFCEQMD AKGLLNFTME NRKNLSAIRE
201: ELSVALESAM EPARLVLDSL EGFYPSDQTT QQGDKKDAAL QGMRRSCLMF LEAMAALLAR ADPGADHLLN PETKQQAKAI ADEWKPKLAG AGIDAANGNS
301: LEAEAFLKLL ATFRIASEFD EEELCKLVLA VARRRQAPEL CRSLGLTHKM PGVIEVLVNG GRQIDAVHFV HAFELTERFP PVPLLKTYLK DLRRNSQGKG
401: GNMGGAGGGL GDANAQELAA LKAVIRCVEE YKLEADYALD PLQKRVAQLE KSKADKKRMG EAGKYQQPKK QRANGGFHGF RGSASGGAAA GRQAPPVFSE
501: RAAYTVERYP YAGPGPGPNT FDYPLPSQAA YIQQANDQRS YFYPQDDRVP PSSYNAAPSN YGSYMGSGLQ SSHQPYM
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.