Factsheet for VIT_07s0151g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_04s0043g00960.t01
VIT_05s0020g03470.t01
VIT_09s0002g01530.t01
VIT_09s0002g05240.t01
VIT_16s0115g00130.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	VIT_09s0002g05240.t01	AT1G15570.1	21798944
AT5G48385.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT5G48385.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT5G48385.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT5G48385.1	VIT_04s0043g00960.t01	AT3G13990.1	21798944
AT5G48385.1	VIT_09s0002g01530.t01	AT3G13990.1	21798944
AT5G48385.1	VIT_05s0020g03470.t01	AT3G22440.1	21798944
AT5G48385.1	VIT_05s0020g03470.t01	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66282	Soybean	cytosol	73.36	75.64
KRH07289	Soybean	cytosol	72.29	74.54
KRH66280	Soybean	cytosol	71.94	74.45
PGSC0003DMT400053214	Potato	cytosol	69.27	71.43
Solyc06g007640.2.1	Tomato	nucleus	67.14	70.52
PGSC0003DMT400071153	Potato	nucleus	66.07	68.26
Solyc06g082930.2.1	Tomato	nucleus	64.83	68.22
GSMUA_Achr2P05710_001	Banana	nucleus	22.56	65.46
CDY05684	Canola	cytosol	58.44	63.64
Bra020704.1-P	Field mustard	cytosol	58.08	63.01
CDY48750	Canola	cytosol	58.44	62.43
Bra036176.1-P	Field mustard	cytosol	57.19	61.92
Bra037489.1-P	Field mustard	cytosol	60.04	61.79
AT5G48385.1	Thale cress	cytosol	60.92	61.47
GSMUA_Achr8P29000_001	Banana	nucleus	58.44	60.93
CDY00066	Canola	cytosol	57.73	60.86
GSMUA_Achr9P08130_001	Banana	cytosol	57.19	59.63
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	22.56	59.62
EES02294	Sorghum	nucleus	55.24	58.02
HORVU5Hr1G051330.1	Barley	cytosol	55.42	57.88
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	60.04	57.48
TraesCS5A01G168100.1	Wheat	cytosol	54.88	57.33
Zm00001d005107_P001	Maize	cytosol	54.17	57.12
Zm00001d019890_P001	Maize	nucleus	53.82	56.74
TraesCS5D01G172300.2	Wheat	cytosol	55.77	56.68
TraesCS5B01G164900.2	Wheat	cytosol	55.42	56.32
Os09t0248300-01	Rice	cytosol	54.17	56.27
Os09t0248200-01	Rice	cytosol	54.0	55.78
Zm00001d019892_P001	Maize	nucleus	39.43	54.81
VIT_07s0129g00610.t01	Wine grape	cytosol	45.65	44.54
VIT_19s0090g01710.t01	Wine grape	cytosol	15.99	33.21
VIT_05s0020g03470.t01	Wine grape	nucleus	30.73	33.14
VIT_19s0090g01700.t01	Wine grape	cytosol	21.14	30.91
VIT_11s0016g04070.t01	Wine grape	nucleus	26.64	28.14
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	14.03	26.51
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	12.08	23.37
CDX86307	Canola	nucleus	59.86	22.57
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	60.75	21.15
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	15.45	19.91
VIT_19s0014g00060.t01	Wine grape	nucleus	7.64	13.56
Bra037488.1-P	Field mustard	cytosol	0.18	0.11

Protein Annotations

EntrezGene:100853542	wikigene:100853542	MapMan:35.1	EMBL:AM445937	ProteinID:CAN80762	ProteinID:CAN80762.1
ProteinID:CCB48289	ProteinID:CCB48289.1	ncoils:Coil	UniProt:F6H7U7	EMBL:FN595253	InterPro:Frigida
GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0030154	EntrezGene:LOC100853542	wikigene:LOC100853542	PFAM:PF07899	PANTHER:PTHR31791	PANTHER:PTHR31791:SF12
SignalP:SignalP-noTM	UniParc:UPI0002109595	ArrayExpress:VIT_07s0151g00650	EnsemblPlantsGene:VIT_07s0151g00650	EnsemblPlants:VIT_07s0151g00650.t01	RefSeq:XP_003634846
RefSeq:XP_003634846.1	:	:	:	:	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6H7U7]

Coordinates

chr7_random:+:1026629..1032603

Molecular Weight (calculated)

63180.5 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.433

Length

563 amino acids

Sequence
(BLAST)

001: MIRSRGIFLG VVLWVFFAME GNQSVATLID STTCKIQQLQ KAFAELESHR ALTLNLKWKQ LEEHFHGLEK SLKRRFNELE DQEKEFEMKT MEAQQLLEKR
101: EAAVVAKEQD SLRRLQEKRD AAVFAIVNAL GKHDKLSSSG HAVVASENRA GVPIMEEKPL DAMAAESNLE DVKGSSEIEN VELKSYPQLI KLCEDMDSEG
201: LHKFISDNRK NLAAMREEIP QALKAAMDPA RFVLDSLEDF YRIEIPNLDG KKDANLLGLR RTCIMLMECL SILLTNPDLG PVSEVSDDVK EIAKAIAEEW
301: KPKLDALDID ASNGNSLEAH AFLQLLATFG IASDFDQEEI SRLIPMVSRR RQTADLCRSL GLSEKMPGVI EILINSGRQI DAVNLAFAFE LTEQFSPVPL
401: LKSYLKEARK ASSPLKPGNA SPTAQNEVNE RELTALKAVI KCIEDHKLEE EYPLDPLQKR VVQLEKAKAD KKRATEAAKP QPKRPRANGV GYGPRATNVA
501: ADKTFYARVT DRYPQYIYDR PYVYPVSTDN HGPSLLGSAT YNLSPSHGNY FGNGYQYQAP YLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.