Factsheet for VIT_11s0016g04070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60292	Soybean	nucleus	57.41	58.85
KRH41582	Soybean	nucleus	57.04	58.46
GSMUA_Achr10P...	Banana	nucleus	46.53	47.78
PGSC0003DMT400047832	Potato	nucleus	47.47	47.56
Solyc11g071340.1.1	Tomato	nucleus	41.28	45.93
VIT_05s0020g03470.t01	Wine grape	nucleus	33.96	34.67
Zm00001d039594_P001	Maize	extracellular, plasma membrane	32.46	27.07
KXG31679	Sorghum	nucleus	31.71	26.7
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	28.14	26.64
Os01t0181000-00	Rice	nucleus	29.64	26.55
VIT_07s0129g00610.t01	Wine grape	cytosol	25.89	23.92
TraesCS3A01G117300.1	Wheat	cytosol, nucleus, plastid	29.27	23.85
TraesCS3D01G119200.1	Wheat	cytosol, nucleus, plastid	29.46	23.82
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	29.27	23.71
VIT_19s0090g01700.t01	Wine grape	cytosol	16.7	23.12
HORVU3Hr1G021380.1	Barley	nucleus	16.7	22.53
VIT_19s0090g01710.t01	Wine grape	cytosol	11.26	22.14
HORVU3Hr1G033120.2	Barley	nucleus	10.32	20.37
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	11.26	20.13
HORVU0Hr1G036250.1	Barley	cytosol	7.88	20.1
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	6.0	19.63
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	14.26	17.39
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	9.19	16.84
VIT_19s0014g00060.t01	Wine grape	nucleus	6.75	11.36

Protein Annotations

EntrezGene:100266187	wikigene:100266187	MapMan:35.1	ProteinID:CCB51523	ProteinID:CCB51523.1	UniProt:F6HH27
EMBL:FN595756	InterPro:Frigida	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	EntrezGene:LOC100266187	wikigene:LOC100266187	PFAM:PF07899
PANTHER:PTHR31791	PANTHER:PTHR31791:SF10	TIGR:TC61668	UniParc:UPI0002108A8A	ArrayExpress:VIT_11s0016g04070	EnsemblPlantsGene:VIT_11s0016g04070
EnsemblPlants:VIT_11s0016g04070.t01	RefSeq:XP_002281155	RefSeq:XP_002281155.2	SEG:seg	:	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HH27]

Coordinates

chr11:+:3329915..3336836

Molecular Weight (calculated)

57908.4 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.567

Length

533 amino acids

Sequence
(BLAST)

001: MAIDTDRVQK LFDSLEAQKT ILSTCTQLYK TLSNHFSSLQ HSLSQKSSSL DSKFQALESD SKKTLESLDQ RENSIPERES SAAARIEEQR EAALSEFEKA
101: VPENAELSEC LKSYCRKMDS SGLLRFMVSK RKESMSLRSE IVSAMEESVD SARLVLDAVE EFVSQKSGKV GIPDKRWACG MLMQALFPAA ELGGKTVPKP
201: AFARSVVERA ARVAELWKGK MGDGGEGSMI GPTEAAMFMQ MVAGFGLKPK FDEEFLRKQV LEFASRRDMP KLAIALGFGE KMGDIIDELV KSGKEIEAVY
301: FASESGLTER FSPVSLLKSY LHNSRKNATT ILKNGNYSTA ATEESGNVEL NSIKTIIKCV EDHKLESEFS IDSLRKRATQ LEKAKVERKK SSAGASKPPN
401: KRAHGGGSGS GSGRGSGPSA FRPAKAPKFS NSTYPSFGRR NPAPPPQHSP AGRYSGPFSY PAQGVYDGPT PPPYASTYGG PHPQTPTIPQ QHYSLSVDDM
501: GAGGMRASGS YGGQTSYNAY DYAAAAPPTY HTQ

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.