Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 98.01 | 97.27 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 97.25 | 96.66 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 54.59 | 90.38 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 35.17 | 85.19 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 24.77 | 77.51 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 18.35 | 73.62 |
| Os01t0181000-00 | Rice | nucleus | 60.09 | 66.05 |
| KXG31679 | Sorghum | nucleus | 60.09 | 62.09 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 58.1 | 59.47 |
| GSMUA_Achr10P... | Banana | nucleus | 28.75 | 36.22 |
| KRH41582 | Soybean | nucleus | 23.55 | 29.62 |
| KRH60292 | Soybean | nucleus | 23.39 | 29.42 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 23.85 | 29.27 |
| PGSC0003DMT400047832 | Potato | nucleus | 21.56 | 26.5 |
| Solyc11g071340.1.1 | Tomato | nucleus | 18.5 | 25.26 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 20.34 | 24.01 |
| TraesCS5A01G168100.1 | Wheat | cytosol | 18.2 | 22.08 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 17.43 | 18.07 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 12.08 | 15.43 |
| TraesCS4A01G329000.1 | Wheat | plastid | 10.4 | 13.74 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G117300.1 | EnsemblPlantsGene:TraesCS3A01G117300 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF10 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:87101529..87105415
Molecular Weight (calculated)
71076.8 Da
IEP (calculated)
4.394
GRAVY (calculated)
-0.504
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVQTKAQLL PSQHGHEPIS KLPPIQLQRL PALAAMATTD DPTATGEVRR LLEHLDSQQQ LLATCHDAWS RTLAHFASLD QDVASRSASV DEALAAADAS
101: TSESLAALEA REASVPVRLT EASDALSAAL AEAEAESAAP PPADIHGALR WICRRMDAAA LWRFMAARRR ELATVRKEIA PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKRDSPA PINEEVEMTE ADDADNAALP DKKVEQADAK EEEEEEEVEE
301: VEEEEEEEEE EEEEEEDQEE LVAASGDEEE ENPEEVENET QEDPEEAGME ALKEKKGEEV KVEVPADEKI AEEAGKSEVK EETKAMGEVD KEGEKGALGQ
401: VEAHLFLQMV AAFGLKDKFD GEFLKSLFVA NRRRKELARF AFILGFEETV ADVVQELVTS GNVIEAIYIA HEACLLERFP PAPLLNSYIK DSTEKAQAIL
501: SSGRRSSSAV EESKTLECNA CKAVIRCVES CQLVSVFNIE HLKKKVARMD REKADRKRLG SGNRFQNKRA RGAAGPQSFP AAKSARASGS GSGYGPSFQN
601: PVSRSFGYAA RAGYVNPAAA AQPYYAPGSM AARRGGVLYG GPGAAFGAQQ PYHR
101: TSESLAALEA REASVPVRLT EASDALSAAL AEAEAESAAP PPADIHGALR WICRRMDAAA LWRFMAARRR ELATVRKEIA PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKRDSPA PINEEVEMTE ADDADNAALP DKKVEQADAK EEEEEEEVEE
301: VEEEEEEEEE EEEEEEDQEE LVAASGDEEE ENPEEVENET QEDPEEAGME ALKEKKGEEV KVEVPADEKI AEEAGKSEVK EETKAMGEVD KEGEKGALGQ
401: VEAHLFLQMV AAFGLKDKFD GEFLKSLFVA NRRRKELARF AFILGFEETV ADVVQELVTS GNVIEAIYIA HEACLLERFP PAPLLNSYIK DSTEKAQAIL
501: SSGRRSSSAV EESKTLECNA CKAVIRCVES CQLVSVFNIE HLKKKVARMD REKADRKRLG SGNRFQNKRA RGAAGPQSFP AAKSARASGS GSGYGPSFQN
601: PVSRSFGYAA RAGYVNPAAA AQPYYAPGSM AARRGGVLYG GPGAAFGAQQ PYHR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.