Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 97.88 | 98.02 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 97.27 | 98.01 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 55.39 | 92.41 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 36.12 | 88.15 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 24.89 | 78.47 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 18.51 | 74.85 |
| Os01t0181000-00 | Rice | nucleus | 60.55 | 67.06 |
| KXG31679 | Sorghum | nucleus | 59.64 | 62.09 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 57.81 | 59.62 |
| GSMUA_Achr10P... | Banana | nucleus | 28.83 | 36.61 |
| KRH41582 | Soybean | nucleus | 23.37 | 29.62 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 23.82 | 29.46 |
| KRH60292 | Soybean | nucleus | 23.22 | 29.42 |
| PGSC0003DMT400047832 | Potato | nucleus | 20.94 | 25.94 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 20.64 | 24.64 |
| Solyc11g071340.1.1 | Tomato | nucleus | 17.91 | 24.63 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 18.21 | 21.66 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 18.21 | 19.05 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 11.99 | 15.86 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 10.93 | 12.83 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G119200.1 | EnsemblPlantsGene:TraesCS3D01G119200 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF10 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:73894613..73898331
Molecular Weight (calculated)
71541.1 Da
IEP (calculated)
4.348
GRAVY (calculated)
-0.515
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVQTKAQLL PSQHGHEPIS KLPPIQLQRL PALAAMATTD DATATGEVRR LLEHLDSQQQ LLATCHDAWS RTLAHFASLD QDVASRSASV DEALAAADAS
101: TSESLAALEA REASVPVRLA EASDALSAAL AEAEAESAAP PPADIRGALR WICRRMDAAA LWRFMAARRR ELAAVRKEIG PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKRDSPA PINEEVEMTE ADDVDNAAVP DKKVEQADAK EEEEEEEVDE
301: VEVEEEEEEE EEEEEEEEEE EDQEELVAAS GDEEEENPEE VDNETQEDPE EAGMEALKEK KGEEVKVEVP ADEKIAEEAG KSEVKEETKA TGEVDKEGEK
401: GALGQVEAHL FLQMVAAFGL KDKFDGEFLK SLFVANRRRK ELARFAFILG FEETVADVVQ ELVTSGNVIE AIYIAHEACL LERFPPAPLL NSYIKDSTEK
501: AQAILSSGRR SSSAVEESKT LECNACKAVI RCVESCQLVS VFNIDHLKKK AARMDREKAD RKRLGSGNRF QNKRARGAAG PQSFPASKSA RASGSGSGYG
601: PSFQNPVSRS FGYAARAGYV NPAAAAQPYY APGSMAARRG GVLYGGPGAA FGAQQPYHR
101: TSESLAALEA REASVPVRLA EASDALSAAL AEAEAESAAP PPADIRGALR WICRRMDAAA LWRFMAARRR ELAAVRKEIG PTVAASVDPP RLVLDVLSDF
201: LEAGEGAGED QCWVLGMLLR SLFGSDGRKP PEIGDTLVER ASVVAKNWSE RFGIKRDSPA PINEEVEMTE ADDVDNAAVP DKKVEQADAK EEEEEEEVDE
301: VEVEEEEEEE EEEEEEEEEE EDQEELVAAS GDEEEENPEE VDNETQEDPE EAGMEALKEK KGEEVKVEVP ADEKIAEEAG KSEVKEETKA TGEVDKEGEK
401: GALGQVEAHL FLQMVAAFGL KDKFDGEFLK SLFVANRRRK ELARFAFILG FEETVADVVQ ELVTSGNVIE AIYIAHEACL LERFPPAPLL NSYIKDSTEK
501: AQAILSSGRR SSSAVEESKT LECNACKAVI RCVESCQLVS VFNIDHLKKK AARMDREKAD RKRLGSGNRF QNKRARGAAG PQSFPASKSA RASGSGSGYG
601: PSFQNPVSRS FGYAARAGYV NPAAAAQPYY APGSMAARRG GVLYGGPGAA FGAQQPYHR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.