Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G036250.1 | Barley | cytosol | 64.07 | 82.78 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 46.67 | 77.3 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 95.93 | 65.57 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 88.15 | 36.17 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 88.15 | 36.12 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 85.19 | 35.17 |
| Os01t0181000-00 | Rice | nucleus | 47.78 | 21.68 |
| KXG31679 | Sorghum | nucleus | 49.63 | 21.17 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 47.04 | 19.87 |
| GSMUA_Achr10P... | Banana | nucleus | 21.85 | 11.37 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 20.37 | 10.32 |
| KRH60292 | Soybean | nucleus | 17.04 | 8.85 |
| PGSC0003DMT400047832 | Potato | nucleus | 17.04 | 8.65 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 17.04 | 8.29 |
| KRH41582 | Soybean | nucleus | 15.93 | 8.27 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 15.93 | 6.9 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 13.7 | 6.86 |
| Solyc11g071340.1.1 | Tomato | nucleus | 8.89 | 5.01 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 9.63 | 4.89 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 8.89 | 4.83 |
| HORVU3Hr1G033190.1 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G033120.2 | EnsemblPlantsGene:HORVU3Hr1G033120 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF10 | PFAM:PF07899 | SEG:seg | UniParc:UPI000B47E260 | UniProt:A0A287KPD2 | MapMan:35.2 |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287KPD2]
Coordinates
chrchr3H:+:172971428..172977525
Molecular Weight (calculated)
30214.3 Da
IEP (calculated)
3.881
GRAVY (calculated)
-0.853
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEADDVDNA AVPDKKVEQA DAKEEEEEEE EEDEEEEEEE EEEEEVEEVE EEEAEEEGDP EELVAASGDE EEENPEEVDN ETQEDPEEAG MEALKEKKGE
101: EVKVVVPADE KIAEEAGKSE VKEESKATGE VVKEGENGAL WQAEAHLFLQ MVAAFGLKDK FDGEFLKSLF VANRRRKELA RFAYVLGFEE TVADVVQELL
201: TSGNVIEGIY IAHEACLLER FPPAPLLHSY IKDSTKKAQA MLSSGRRSSS SVEESKSLEC IRLQGCHQVR
101: EVKVVVPADE KIAEEAGKSE VKEESKATGE VVKEGENGAL WQAEAHLFLQ MVAAFGLKDK FDGEFLKSLF VANRRRKELA RFAYVLGFEE TVADVVQELL
201: TSGNVIEGIY IAHEACLLER FPPAPLLHSY IKDSTKKAQA MLSSGRRSSS SVEESKSLEC IRLQGCHQVR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.