Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G432600.1 | Wheat | nucleus | 91.33 | 90.03 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 91.01 | 90.0 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 90.69 | 89.54 |
| Os07t0592300-01 | Rice | nucleus | 68.38 | 70.07 |
| EER99638 | Sorghum | cytosol | 69.02 | 69.69 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 66.93 | 66.93 |
| Zm00001d006752_P003 | Maize | nucleus | 65.97 | 62.75 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 44.14 | 45.23 |
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 40.61 | 43.85 |
| KRH04492 | Soybean | nucleus | 35.15 | 39.6 |
| KRH58029 | Soybean | nucleus | 34.19 | 38.52 |
| PGSC0003DMT400065090 | Potato | nucleus | 37.08 | 37.99 |
| Solyc04g008840.2.1 | Tomato | nucleus | 36.6 | 37.87 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 29.7 | 34.32 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 22.47 | 25.23 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 16.85 | 21.13 |
| HORVU3Hr1G033190.1 | Barley | nucleus | 3.53 | 20.75 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 11.4 | 17.97 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 4.49 | 17.18 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 5.46 | 16.27 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 6.9 | 15.93 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 12.68 | 14.85 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G088810.2 | EnsemblPlantsGene:HORVU1Hr1G088810 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF4 | PFAM:PF07899 | SEG:seg | UniParc:UPI000B47F011 | UniProt:A0A287GMZ6 | MapMan:35.1 |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287GMZ6]
Coordinates
chrchr1H:-:542679938..542684045
Molecular Weight (calculated)
67339.7 Da
IEP (calculated)
8.273
GRAVY (calculated)
-0.499
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEAASHIS GGSESTTGPL LEQLAEVFGK LKSHTEASLQ LQSGIQWEDI KVHFVNLEKS YRSKCDELEE KQKALEEHKA GGRRLIAEKE ADLSAKERAS
101: VNKLQELRDA AVSTLAEVRN KYNVELSEIL EANGSKDKKV KTPTNDTSAS LPSEEHTSAK ESGKPSEPSP VEAKPRPALK QLCEQMDAKG LLKYISENSK
201: KLAGFRDELC VALKCATDPA RFVLDSLEGF FPDQLPGDKN HSVQGQRRSC IVLMEAIAHS LGMKEPGGKH LWSSEIMEQA KAIAEEWKSK IAEVDLDASD
301: GYSLEAQAFL QLLATFNIDL VLDEDELCKI VVAVSRRKQA AELCRSLGFA ERIPGVIEEL IKKHRQIDAV QFIQAFGLSE AFPPAPLLKA YVDDLKVSLN
401: NKGDAGATPS ADDLKNRELL ALRAIIKCIE EYKLQKECPL GPLQKRINEL KPKGSKRSGS AIRGYAKKPR VSGFSAPRRP TAAAPRRPAA PVGAWQQRAP
501: PPVPAYPDRY GVAADRYHYA PPPAAAYEAA TYAAYGGGGG SEQYRAPAPK PYQYNPGSAA AAAASYNNIP QYKVMYGGPG AQPSAAGGFA AYGAAAQQPQ
601: PAASSGGYLS YAAGFGYRPS QQQ
101: VNKLQELRDA AVSTLAEVRN KYNVELSEIL EANGSKDKKV KTPTNDTSAS LPSEEHTSAK ESGKPSEPSP VEAKPRPALK QLCEQMDAKG LLKYISENSK
201: KLAGFRDELC VALKCATDPA RFVLDSLEGF FPDQLPGDKN HSVQGQRRSC IVLMEAIAHS LGMKEPGGKH LWSSEIMEQA KAIAEEWKSK IAEVDLDASD
301: GYSLEAQAFL QLLATFNIDL VLDEDELCKI VVAVSRRKQA AELCRSLGFA ERIPGVIEEL IKKHRQIDAV QFIQAFGLSE AFPPAPLLKA YVDDLKVSLN
401: NKGDAGATPS ADDLKNRELL ALRAIIKCIE EYKLQKECPL GPLQKRINEL KPKGSKRSGS AIRGYAKKPR VSGFSAPRRP TAAAPRRPAA PVGAWQQRAP
501: PPVPAYPDRY GVAADRYHYA PPPAAAYEAA TYAAYGGGGG SEQYRAPAPK PYQYNPGSAA AAAASYNNIP QYKVMYGGPG AQPSAAGGFA AYGAAAQQPQ
601: PAASSGGYLS YAAGFGYRPS QQQ
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.