CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58029	Soybean	nucleus	92.22	92.22
VIT_07s0129g00610.t01	Wine grape	cytosol	62.03	59.45
Solyc04g008840.2.1	Tomato	nucleus	48.46	44.52
PGSC0003DMT400065090	Potato	nucleus	48.28	43.91
GSMUA_Achr5P16090_001	Banana	nucleus	45.57	41.45
KRH66282	Soybean	cytosol	38.16	38.64
KRH07289	Soybean	cytosol	37.97	38.46
KRH66280	Soybean	cytosol	37.79	38.42
Os07t0592300-01	Rice	nucleus	40.14	36.51
Zm00001d022016_P001	Maize	extracellular, plasma membrane	39.6	35.15
HORVU1Hr1G088810.2	Barley	nucleus	39.6	35.15
EER99638	Sorghum	cytosol	38.88	34.85
TraesCS1A01G403200.1	Wheat	nucleus	38.7	33.91
TraesCS1D01G411200.1	Wheat	nucleus	38.16	33.49
TraesCS1B01G432600.1	Wheat	nucleus	38.16	33.39
Zm00001d006752_P003	Maize	nucleus	39.06	32.98
KRH35520	Soybean	cytosol	26.76	27.92
KRG91301	Soybean	cytosol	26.4	27.86
KRH60292	Soybean	nucleus	22.24	23.65
KRH41582	Soybean	nucleus	22.06	23.46
KRH46301	Soybean	cytosol	22.06	22.34
KRG98570	Soybean	cytosol, nucleus, plastid	22.06	22.22
KRH73863	Soybean	nucleus	20.25	21.58
KRH63904	Soybean	nucleus	16.09	14.81
KRH54046	Soybean	nucleus	15.19	14.19

Protein Annotations

EMBL:ACUP02010422	EnsemblPlants:KRH04492	EnsemblPlantsGene:GLYMA_17G165100	EntrezGene:100817459	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF4	PFAM:PF07899	ProteinID:KRH04492	ProteinID:KRH04492.1
SEG:seg	UniParc:UPI0002958423	UniProt:K7MM08	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr17:-:14876473..14880114

Molecular Weight (calculated)

61624.1 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.579

Length

553 amino acids

Sequence
(BLAST)

001: MGVEDQDEKI NVQSVIEQLS QAFLELKAQK GETENKIQWV EIKQHFHDLE TELNKKLEEL EAKERQYEAK QLEVDTLLAE RKAVVASKEQ DLLDRLQELK
101: DAAVASIVEA HANHWNATLE SVYDGKNKDH KVSSSLGDTN SSEDDFPHKS GEKSKGVAVE GRPHPELTQF CEQMDAKGLL NYIMENKKKL SVNCEEISVA
201: LQSATNPARL VLDLLEGFYP TSETSQLKDK SGAALQGMRK SCIIILEAMA TLLARADPGA DHLLNPQTKQ QAKAIADEWR PKLARADTDA ANGNSLEAKA
301: FFQLISTFRI ASEFDEEELC KLVLAVAQLR QAPELCRSIG LIHKMPVVVE SLINNGKQIA AVHFIHAFQL QESFPPVPLL KAYLKNRRRN SQVKTGNVRD
401: IASAKNDANA QELSALRAVI KCIEEYKLES EYPPDTLRKR VLQLEKSKGD RKRSGGEFIK RPQSKRPRPN ERHFSLHSSG SAASAVILGR QVPPVRAPYA
501: ANPDRYPHAG AIPYNYQVPG QSVYTAPSNA PPSNYGRYMG TSTSLQSSHQ PYM

Best Arabidopsis Sequence Match ( AT1G31814.1 )
(BLAST)

001: MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ

Arabidopsis Description

FRL2Inactive FRIGIDA-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.