Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G403200.1 | Wheat | nucleus | 97.3 | 97.15 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 97.3 | 96.99 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 90.0 | 91.01 |
| Os07t0592300-01 | Rice | nucleus | 66.51 | 68.91 |
| EER99638 | Sorghum | cytosol | 66.83 | 68.23 |
| Zm00001d022016_P001 | Maize | extracellular, plasma membrane | 65.08 | 65.81 |
| Zm00001d006752_P003 | Maize | nucleus | 64.92 | 62.44 |
| GSMUA_Achr5P16090_001 | Banana | nucleus | 42.54 | 44.08 |
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 39.37 | 42.98 |
| KRH04492 | Soybean | nucleus | 33.49 | 38.16 |
| Solyc04g008840.2.1 | Tomato | nucleus | 36.19 | 37.87 |
| PGSC0003DMT400065090 | Potato | nucleus | 36.35 | 37.66 |
| KRH58029 | Soybean | nucleus | 32.54 | 37.07 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 29.84 | 33.94 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 22.54 | 25.72 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 16.83 | 21.29 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 19.05 | 18.21 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 12.7 | 14.26 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G411200.1 | EnsemblPlantsGene:TraesCS1D01G411200 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF4 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:472537631..472540219
Molecular Weight (calculated)
68060.5 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.522
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEAASHIS GGSESTTVAL LEQLTEVFGK LKSHTEASLQ LQSGIQWEDI KVHFLNLEKS YRSKCDELEE KQKALEEQKA GGRRLIAEKE ADLSAKERAS
101: VNKLQELKDA AVSTLAEVRK KYNVELSEIL DANGSKDKKV KTPTDDTNTS LPSDEHNSAK GSGKPSEPSP VEVKPRPALK ELCEQMDAKG LLKYISENSK
201: KLAGFRDELC VALKCATDPA RFVLDSLEGF FPDQLPGDIN YSAQGQRRSC IVLMEALAHS IGMKEPGGKH PWSSEIMEQA KAIAKEWKSK IAEVDLDASD
301: GYSLEAHAFL QLLTTFNVDL VLDEDELYKI VVAISRRRQT AELCRSLGLT ERIPGVIEEL IKKHRQIDAV QFIQAFGLSE AFPPAPLLKA YVDEIKGSLN
401: NKGDAGATPS VDELKNRELI ALRAIIKCIE EYKLQKECPL GPLQKRINEL KPKGAKRPSG SANRNYAKKQ RVSGGGTSAP RRPTVAAPRR PAAPVGTWQQ
501: RAPPPVPAYP DRYGVAADRY HYAPPPAAAY DAATYAAYGG SGEQYRAAAP KPYQYNPGSA AAAAAAAAAS YNNIPQYKVV YGGPGAQPSA AGGYAPYGGG
601: AAAQQPQPAA SSGGYLSYAA GFGYRPSQQQ
101: VNKLQELKDA AVSTLAEVRK KYNVELSEIL DANGSKDKKV KTPTDDTNTS LPSDEHNSAK GSGKPSEPSP VEVKPRPALK ELCEQMDAKG LLKYISENSK
201: KLAGFRDELC VALKCATDPA RFVLDSLEGF FPDQLPGDIN YSAQGQRRSC IVLMEALAHS IGMKEPGGKH PWSSEIMEQA KAIAKEWKSK IAEVDLDASD
301: GYSLEAHAFL QLLTTFNVDL VLDEDELYKI VVAISRRRQT AELCRSLGLT ERIPGVIEEL IKKHRQIDAV QFIQAFGLSE AFPPAPLLKA YVDEIKGSLN
401: NKGDAGATPS VDELKNRELI ALRAIIKCIE EYKLQKECPL GPLQKRINEL KPKGAKRPSG SANRNYAKKQ RVSGGGTSAP RRPTVAAPRR PAAPVGTWQQ
501: RAPPPVPAYP DRYGVAADRY HYAPPPAAAY DAATYAAYGG SGEQYRAAAP KPYQYNPGSA AAAAAAAAAS YNNIPQYKVV YGGPGAQPSA AGGYAPYGGG
601: AAAQQPQPAA SSGGYLSYAA GFGYRPSQQQ
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.