Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G434500.1 | Wheat | cytosol | 98.37 | 98.01 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 97.28 | 96.76 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 94.93 | 94.41 |
| Os03t0794900-01 | Rice | nucleus | 75.54 | 75.82 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 49.09 | 55.42 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 48.73 | 55.12 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 22.83 | 53.85 |
| KRH35520 | Soybean | cytosol | 42.21 | 43.96 |
| KRG91301 | Soybean | cytosol | 41.67 | 43.89 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 40.94 | 43.3 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 39.67 | 41.71 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 39.13 | 41.38 |
| PGSC0003DMT400077344 | Potato | nucleus | 38.41 | 41.25 |
| Solyc09g076050.2.1 | Tomato | nucleus | 38.41 | 41.25 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 39.49 | 40.98 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 39.31 | 40.64 |
| AT4G14900.1 | Thale cress | nucleus | 38.77 | 40.23 |
| CDY38318 | Canola | nucleus | 32.07 | 33.33 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 25.72 | 25.63 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 25.72 | 22.54 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 19.75 | 21.89 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 24.64 | 20.64 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 14.31 | 14.08 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G442300.1 | EnsemblPlantsGene:TraesCS5D01G442300 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF11 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:494469783..494472986
Molecular Weight (calculated)
59445.4 Da
IEP (calculated)
6.866
GRAVY (calculated)
-0.397
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAEEAA PGGADAIRDG FAELERQQEL LASCTRLYQQ LTEHFGSLER GIKSRSDSLR ARRRVVELRA SRRLDALRRR ELSIDASVKL ALSRLDALAK
101: SPAPKRDRED GDGPPSPPPP PSDDVAEGLA ALCAAMDPAG FLAFVVERRK EVDALRAELP AALQRCVDPA RFAMDAVSEV FPVDRRAVRS PTDLAWACVL
201: ILEAVVPALA DPDPEIGAAR PMVPQAARDR ARGMAAEWKE AAERKGGVEG AKPPDAHAFL QHVATFAVAE KEDKELYKRI VLSFSWRRQM PRLALTLGLE
301: DDMEEIIEEL ITKGQQLDAV NFAYEAGLLE KFSPVPLLKS YLEDSKKMYC TSDNVSTSSG QSGVNANKKE QSALRAVIKC VEDHKLEAEF PLEDLRKRLE
401: ELEMAKTEKK KAASSCSSGG PASKRIKGSA GGAMSPSKSG RLSDNTGAPS SPSTATSSST ATAFIGSPAS HVSYGTGSPY SYDRSAGHAL YCGQSPMREP
501: YAYPPAVPVP NVGLGMPYQA PPMTYPIYAG YNSGPGAYGN AMAPAFHQAY YR
101: SPAPKRDRED GDGPPSPPPP PSDDVAEGLA ALCAAMDPAG FLAFVVERRK EVDALRAELP AALQRCVDPA RFAMDAVSEV FPVDRRAVRS PTDLAWACVL
201: ILEAVVPALA DPDPEIGAAR PMVPQAARDR ARGMAAEWKE AAERKGGVEG AKPPDAHAFL QHVATFAVAE KEDKELYKRI VLSFSWRRQM PRLALTLGLE
301: DDMEEIIEEL ITKGQQLDAV NFAYEAGLLE KFSPVPLLKS YLEDSKKMYC TSDNVSTSSG QSGVNANKKE QSALRAVIKC VEDHKLEAEF PLEDLRKRLE
401: ELEMAKTEKK KAASSCSSGG PASKRIKGSA GGAMSPSKSG RLSDNTGAPS SPSTATSSST ATAFIGSPAS HVSYGTGSPY SYDRSAGHAL YCGQSPMREP
501: YAYPPAVPVP NVGLGMPYQA PPMTYPIYAG YNSGPGAYGN AMAPAFHQAY YR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.