Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G071400.2 | Wheat | nucleus | 96.05 | 97.93 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 95.26 | 97.46 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 89.73 | 92.23 |
| EER88029 | Sorghum | nucleus | 68.51 | 70.66 |
| Zm00001d044979_P010 | Maize | nucleus | 66.7 | 69.37 |
| Os06t0206100-01 | Rice | nucleus | 66.82 | 69.32 |
| Zm00001d037122_P009 | Maize | nucleus | 66.37 | 68.37 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.45 | 50.0 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 36.46 | 39.93 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.02 | 38.63 |
| Solyc12g049230.1.1 | Tomato | nucleus | 33.41 | 37.52 |
| KRH47571 | Soybean | nucleus | 36.0 | 36.96 |
| KRH06147 | Soybean | nucleus | 35.78 | 36.86 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.57 | 33.85 |
| AT3G13990.1 | Thale cress | nucleus | 30.36 | 31.72 |
| CDY65326 | Canola | nucleus | 29.57 | 30.79 |
| CDX97535 | Canola | nucleus | 29.8 | 30.59 |
| CDY33258 | Canola | nucleus | 29.8 | 30.31 |
| Bra021524.1-P | Field mustard | nucleus | 29.68 | 30.2 |
| CDY39087 | Canola | nucleus | 29.57 | 30.01 |
| Bra027380.1-P | Field mustard | nucleus | 29.68 | 29.16 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 21.78 | 23.42 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 14.22 | 15.48 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 14.79 | 15.11 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 13.66 | 14.32 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G166800.4 | EnsemblPlantsGene:TraesCS7A01G166800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 |
| PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7A:+:122177559..122185358
Molecular Weight (calculated)
96591.8 Da
IEP (calculated)
6.673
GRAVY (calculated)
-0.898
Length
886 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGVGGRGG GPRASSDSKA ARAPNPAIDS TIKSIKEVVG GHSEDDIYDA LRESNMDPNE TAQRLLNQDP FHEVKRKRDK KRESVGQKNL AETTAQGEHG
101: TQRTKPHTQR VEIDQRRAHN HGQTYGPSRE FRVVRDNRHG AVENGAEQHK VSTYMQASDR SGISLSSGVV VQSDQNRPPP TTSEGQIMHQ SAKSSYNSDM
201: HQMKRDAQGT AQRHARPYLK NSQNEHQYPN SDLHHASSNY KAAGGFVRAN RREAGVANAP RQYSGRPGSQ FHGPNDSYHA NIQRGNFASA GPSVRRPSFM
301: PRNTQPNHRP AVDTVTRGRS VGRPFGNQNH SRYHQGPASN QKVIQPAKEW KPKSTNKSCT NDADNSGTNA TSPLDSKAEN ANVLDVNSSC DKSSHANVHE
401: MEHVIIPEHL RVPEYEQTRL RFGSFTPGFD SPEHEQTRIR FGSFSPGFDS DQLPTSASPE LEQPEHVQEP VQLVVQEDEF DTEHDEVDEQ VGSQLTTIST
501: SAAESSLQPS EDSEQMNGQE VEDDDGLGLV QSDTPLGAAD DHNIQSTSGL TAFSAYGHED PNMHPNNEAQ LYGLVEPNVH QQVLASSSQG YTSVNPGADN
601: AVQVFRMPEP SVHSQVLPSA SEALSSQLAS SSPIAMSTQQ QHMSQQQQAA QMYPPMHVQH YPNFMPYRHP LYSPVYVPPM AMPNYSANVP YPANGNNYLQ
701: MAGGGSHLTA GQVKYGVSQY KPVPAGNPSG YGNYTHPAGY TISSPGVIGA GVGVDDVNRM KYKDNNIYAP TPQVETSDIW IQNREIPTLQ CPPYYNLSGQ
801: ATPGAYMPNP GNASFSATAQ SSHAQFPGMY HPQQPPSIVS PHPMVHQQVP SAIGPNVGVG VAAPGPQVGA YQQQQLGHMN WRQPNF
101: TQRTKPHTQR VEIDQRRAHN HGQTYGPSRE FRVVRDNRHG AVENGAEQHK VSTYMQASDR SGISLSSGVV VQSDQNRPPP TTSEGQIMHQ SAKSSYNSDM
201: HQMKRDAQGT AQRHARPYLK NSQNEHQYPN SDLHHASSNY KAAGGFVRAN RREAGVANAP RQYSGRPGSQ FHGPNDSYHA NIQRGNFASA GPSVRRPSFM
301: PRNTQPNHRP AVDTVTRGRS VGRPFGNQNH SRYHQGPASN QKVIQPAKEW KPKSTNKSCT NDADNSGTNA TSPLDSKAEN ANVLDVNSSC DKSSHANVHE
401: MEHVIIPEHL RVPEYEQTRL RFGSFTPGFD SPEHEQTRIR FGSFSPGFDS DQLPTSASPE LEQPEHVQEP VQLVVQEDEF DTEHDEVDEQ VGSQLTTIST
501: SAAESSLQPS EDSEQMNGQE VEDDDGLGLV QSDTPLGAAD DHNIQSTSGL TAFSAYGHED PNMHPNNEAQ LYGLVEPNVH QQVLASSSQG YTSVNPGADN
601: AVQVFRMPEP SVHSQVLPSA SEALSSQLAS SSPIAMSTQQ QHMSQQQQAA QMYPPMHVQH YPNFMPYRHP LYSPVYVPPM AMPNYSANVP YPANGNNYLQ
701: MAGGGSHLTA GQVKYGVSQY KPVPAGNPSG YGNYTHPAGY TISSPGVIGA GVGVDDVNRM KYKDNNIYAP TPQVETSDIW IQNREIPTLQ CPPYYNLSGQ
801: ATPGAYMPNP GNASFSATAQ SSHAQFPGMY HPQQPPSIVS PHPMVHQQVP SAIGPNVGVG VAAPGPQVGA YQQQQLGHMN WRQPNF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.