Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 95.86 | 96.19 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 97.93 | 96.05 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 90.33 | 91.07 |
| EER88029 | Sorghum | nucleus | 68.7 | 69.5 |
| Os06t0206100-01 | Rice | nucleus | 67.66 | 68.85 |
| Zm00001d044979_P010 | Maize | nucleus | 67.09 | 68.43 |
| Zm00001d037122_P009 | Maize | nucleus | 66.63 | 67.33 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 14.61 | 49.61 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 37.17 | 39.93 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.51 | 38.4 |
| Solyc12g049230.1.1 | Tomato | nucleus | 33.72 | 37.14 |
| KRH47571 | Soybean | nucleus | 36.71 | 36.96 |
| KRH06147 | Soybean | nucleus | 36.48 | 36.86 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.38 | 34.11 |
| AT3G13990.1 | Thale cress | nucleus | 30.96 | 31.72 |
| CDY65326 | Canola | nucleus | 29.8 | 30.43 |
| CDX97535 | Canola | nucleus | 30.03 | 30.24 |
| CDY33258 | Canola | nucleus | 30.15 | 30.08 |
| Bra021524.1-P | Field mustard | nucleus | 30.03 | 29.97 |
| CDY39087 | Canola | nucleus | 29.92 | 29.78 |
| Bra027380.1-P | Field mustard | nucleus | 29.92 | 28.82 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 22.32 | 23.54 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 15.77 | 16.21 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 15.3 | 15.23 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 12.31 | 12.54 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G071400.2 | EnsemblPlantsGene:TraesCS7B01G071400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 |
| PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7B:+:78546237..78554014
Molecular Weight (calculated)
94964.7 Da
IEP (calculated)
6.631
GRAVY (calculated)
-0.925
Length
869 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGPRASS DSKAARAPNP AIDSTIKSIK EVVGGHSEDD IYDALRESNM DPNETAQRLL NQDPFHEVKR KRDKKRESVG QKNLAETTAQ GEHGTQRTKP
101: HTQRVEIDQR RAHNHGQTYG PSREFRVVRD NRHGAVENGA EQHKVSTYTP VSDRSGVDRP PPTTSEGQIT NQSAKSSYNS DMHHMKRDAQ GTAQRHARPY
201: LKNSQNEHQY PNSDLHHASS NYKAAGGFVR ANRREAGVAN APRQYSGRPG SQFHGPNDSY HANIQRGNFA SAGPSVRRLS FIPRNTQPNH RPAVDTVTRG
301: RSVGRPFGNQ NHSRYHQGPA SNQKVIQPAK EWKPKSTNKS CTNDADNSGT NATSPLDSKA ENANVPDVNS SCDKSSHANV HEMEHVIIPE HLRVPEYEQT
401: RLRFGSFTPG FDSPEHEQTR IRFGSFSPGF DSDQLPTSTS PEPEQPEHVQ EPAQLVVQED EFDTEHDEVD EQVGSQLTTI STSAAESSLP PSEDSEQMNG
501: QEVEDDDGLG LVQSDTPLGA ADDHNIQSTS SLTAFSAYGH EDPNMHPNNE AQLYGLVEPN VHQQVLASSS QQGYTSVNPG ADNAVQVFRM PESSVHSQVL
601: PSASEALSSQ LASSSPIAMS TQQQHMSQQQ QAAQMYPPMH VQHYPNFMPY RHPLYSPVYV PPMAMPNYSA NVPYPANGNN YLQMAGGGSH LTAGQVKYGV
701: SQYKPVPAGN PSGYGNYTHP AGYTISSPGV IGAGVGVDDV NRMKYKDNNI YAPTPQVETS DIWIQNREIP TLQCPPYYNL SGQATPGAYM PNPGNASFSA
801: TAQSSHAQFP GMYHPQQPPS IVSPHPMVHQ QVPSAIGPNV GVGVAAPGPQ VGAYQQQQLG HMNWRQPYF
101: HTQRVEIDQR RAHNHGQTYG PSREFRVVRD NRHGAVENGA EQHKVSTYTP VSDRSGVDRP PPTTSEGQIT NQSAKSSYNS DMHHMKRDAQ GTAQRHARPY
201: LKNSQNEHQY PNSDLHHASS NYKAAGGFVR ANRREAGVAN APRQYSGRPG SQFHGPNDSY HANIQRGNFA SAGPSVRRLS FIPRNTQPNH RPAVDTVTRG
301: RSVGRPFGNQ NHSRYHQGPA SNQKVIQPAK EWKPKSTNKS CTNDADNSGT NATSPLDSKA ENANVPDVNS SCDKSSHANV HEMEHVIIPE HLRVPEYEQT
401: RLRFGSFTPG FDSPEHEQTR IRFGSFSPGF DSDQLPTSTS PEPEQPEHVQ EPAQLVVQED EFDTEHDEVD EQVGSQLTTI STSAAESSLP PSEDSEQMNG
501: QEVEDDDGLG LVQSDTPLGA ADDHNIQSTS SLTAFSAYGH EDPNMHPNNE AQLYGLVEPN VHQQVLASSS QQGYTSVNPG ADNAVQVFRM PESSVHSQVL
601: PSASEALSSQ LASSSPIAMS TQQQHMSQQQ QAAQMYPPMH VQHYPNFMPY RHPLYSPVYV PPMAMPNYSA NVPYPANGNN YLQMAGGGSH LTAGQVKYGV
701: SQYKPVPAGN PSGYGNYTHP AGYTISSPGV IGAGVGVDDV NRMKYKDNNI YAPTPQVETS DIWIQNREIP TLQCPPYYNL SGQATPGAYM PNPGNASFSA
801: TAQSSHAQFP GMYHPQQPPS IVSPHPMVHQ QVPSAIGPNV GVGVAAPGPQ VGAYQQQQLG HMNWRQPYF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.