Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39087 | Canola | nucleus | 95.87 | 95.65 |
| CDY65326 | Canola | nucleus | 77.73 | 79.55 |
| CDX97535 | Canola | nucleus | 78.65 | 79.37 |
| AT3G13990.1 | Thale cress | nucleus | 73.71 | 75.71 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.42 | 55.86 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 47.65 | 51.3 |
| KRH47571 | Soybean | nucleus | 48.45 | 48.9 |
| KRH06147 | Soybean | nucleus | 47.65 | 48.26 |
| Solyc12g049230.1.1 | Tomato | nucleus | 41.22 | 45.5 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 35.82 | 36.75 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 29.16 | 32.82 |
| EER88029 | Sorghum | nucleus | 30.65 | 31.08 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 30.54 | 30.72 |
| Zm00001d044979_P010 | Maize | nucleus | 29.97 | 30.63 |
| Os06t0206100-01 | Rice | nucleus | 29.97 | 30.56 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 30.08 | 30.15 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 29.74 | 30.05 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 30.31 | 29.8 |
| Zm00001d037122_P009 | Maize | nucleus | 29.28 | 29.65 |
| CDY61561 | Canola | cytosol | 2.18 | 28.79 |
| KXG39164 | Sorghum | nucleus | 25.14 | 27.93 |
| Os03t0411000-01 | Rice | nucleus | 24.57 | 27.76 |
| Zm00001d029487_P001 | Maize | nucleus | 23.19 | 27.37 |
| CDY28028 | Canola | nucleus | 17.57 | 18.94 |
| CDY22126 | Canola | nucleus | 17.57 | 18.68 |
| CDY35953 | Canola | nucleus | 17.45 | 18.65 |
| CDY24202 | Canola | nucleus | 11.71 | 18.09 |
| CDX78828 | Canola | nucleus | 14.35 | 17.91 |
| CDY08888 | Canola | nucleus | 11.71 | 17.68 |
| CDY43361 | Canola | nucleus | 11.71 | 17.62 |
| CDY43334 | Canola | nucleus | 16.07 | 17.03 |
| CDY15632 | Canola | nucleus | 15.27 | 16.92 |
| CDX90188 | Canola | nucleus | 15.96 | 16.91 |
| CDY61669 | Canola | nucleus | 14.35 | 16.89 |
| CDX76544 | Canola | nucleus | 11.02 | 16.87 |
| CDY43685 | Canola | nucleus | 15.84 | 16.63 |
| CDX94662 | Canola | nucleus | 15.27 | 16.52 |
| CDX84653 | Canola | nucleus | 15.15 | 16.24 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.41 | 15.91 |
| CDY61562 | Canola | nucleus | 13.66 | 15.62 |
| CDY48333 | Canola | nucleus | 14.7 | 15.55 |
| CDY53767 | Canola | nucleus | 10.91 | 15.45 |
| CDY53764 | Canola | extracellular, vacuole | 7.0 | 14.06 |
| CDX99817 | Canola | nucleus | 9.3 | 13.06 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 9.41 | 12.24 |
| CDY11787 | Canola | nucleus | 7.69 | 9.09 |
Protein Annotations
| EnsemblPlants:CDY33258 | EnsemblPlantsGene:GSBRNA2T00054023001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | ProteinID:CDY33258 | ProteinID:CDY33258.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EE16EF | UniProt:A0A078H8S8 | MapMan:35.2 | : |
Description
BnaC01g37310DBnaC01g37310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8S8]
Coordinates
chrLK032309:+:401033..405547
Molecular Weight (calculated)
94713.8 Da
IEP (calculated)
8.855
GRAVY (calculated)
-0.863
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSESRTGGN RATGPDDDEE ERKVIESIKE IVGNHSDADI YTALKESDMN ADEAVQKLIH QDPFHEVKRR KDRKKEDAVL VEPANVKKPL ESATSEVKVR
101: TQPEHNVRRG GYSRNIFPRN AAPQNAFPRK PLESATSEVK VRTQSEHNVR RGGYSRNVFS RNAAPRNAFA RNPATGSKRE FRVVRDNRSN PNADEELKHS
201: TAQSPASNIS KVATTENKKG STGGLGNHHS SGAQGFTEDC KAAADVRPRD SEIAPLHHPT RKEVSDGKET SRGATLPSTN SVSSSTDPVH VPSPVSRSSP
301: VGAIKREVRG GGFGGKPSEV IGKDPSAGAL SKIGTPNAYR SSSPNSKINQ VSQTTPRESV LPSGVEKNRP LLNRQRGNRG SQYARTQQVG GHTKGVSQNK
401: EWKRKSIQKP VGHNPGVIGT PTKSQACRPA DNITKLESEA VKLQDKLSHV HISETQNVII ADHIRLPETD RCQLTFGSFV REFSSSMNSE PAAFQESCSS
501: EELRDSDRSS PVTAPETLAD GPGVKPIDIL DDHLRVSESD SRVSVPSEQL LPEEEAHRSD NLDEYSEMLK NSDTLVPFQQ AYGNHGSYDF PYFSQTMDEN
601: SRGQGLPSQQ EQASSTHMVN NAPPSTIPML QQQQQQQQGS MQQMYPQVHV SHFPSLMPYR QFVSPVYVPQ MPMPGYSGNP AAYAHPSSGN SYVLMPGGGS
701: HPGSNGVKYG IQQFKPVPGG PTGFGTYNSP NGYQINPPNV VGNAMGLEDP SRMKYKDGNI YVPNPQAETS EIWMQNPRDL SNLQSPPYYN VAGQTPHGAY
801: LPSHTAHPSF NAPAATTQSS QMQFQGLFHP PQPGTRANLH HMGPGLGGNV GVGVVPSPPS QLGHPSWAAN F
101: TQPEHNVRRG GYSRNIFPRN AAPQNAFPRK PLESATSEVK VRTQSEHNVR RGGYSRNVFS RNAAPRNAFA RNPATGSKRE FRVVRDNRSN PNADEELKHS
201: TAQSPASNIS KVATTENKKG STGGLGNHHS SGAQGFTEDC KAAADVRPRD SEIAPLHHPT RKEVSDGKET SRGATLPSTN SVSSSTDPVH VPSPVSRSSP
301: VGAIKREVRG GGFGGKPSEV IGKDPSAGAL SKIGTPNAYR SSSPNSKINQ VSQTTPRESV LPSGVEKNRP LLNRQRGNRG SQYARTQQVG GHTKGVSQNK
401: EWKRKSIQKP VGHNPGVIGT PTKSQACRPA DNITKLESEA VKLQDKLSHV HISETQNVII ADHIRLPETD RCQLTFGSFV REFSSSMNSE PAAFQESCSS
501: EELRDSDRSS PVTAPETLAD GPGVKPIDIL DDHLRVSESD SRVSVPSEQL LPEEEAHRSD NLDEYSEMLK NSDTLVPFQQ AYGNHGSYDF PYFSQTMDEN
601: SRGQGLPSQQ EQASSTHMVN NAPPSTIPML QQQQQQQQGS MQQMYPQVHV SHFPSLMPYR QFVSPVYVPQ MPMPGYSGNP AAYAHPSSGN SYVLMPGGGS
701: HPGSNGVKYG IQQFKPVPGG PTGFGTYNSP NGYQINPPNV VGNAMGLEDP SRMKYKDGNI YVPNPQAETS EIWMQNPRDL SNLQSPPYYN VAGQTPHGAY
801: LPSHTAHPSF NAPAATTQSS QMQFQGLFHP PQPGTRANLH HMGPGLGGNV GVGVVPSPPS QLGHPSWAAN F
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.