Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030134.1-P | Field mustard | nucleus | 95.29 | 95.78 |
| CDX94662 | Canola | nucleus | 91.48 | 89.32 |
| CDY43334 | Canola | nucleus | 82.19 | 78.59 |
| CDX99817 | Canola | nucleus | 61.58 | 78.06 |
| CDX90188 | Canola | nucleus | 81.55 | 77.98 |
| CDY48333 | Canola | nucleus | 81.55 | 77.89 |
| AT1G29370.1 | Thale cress | nucleus | 79.77 | 75.45 |
| AT1G29350.1 | Thale cress | nucleus | 79.77 | 75.45 |
| CDY61561 | Canola | cytosol | 5.47 | 65.15 |
| CDX84653 | Canola | nucleus | 63.36 | 61.25 |
| CDY61562 | Canola | nucleus | 58.91 | 60.76 |
| KRH38470 | Soybean | endoplasmic reticulum | 6.11 | 60.76 |
| CDY43685 | Canola | nucleus | 63.61 | 60.24 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 49.11 | 57.61 |
| CDY11787 | Canola | nucleus | 48.98 | 52.24 |
| Solyc09g018250.2.1 | Tomato | plastid | 6.87 | 50.94 |
| KRH36716 | Soybean | nucleus | 48.85 | 45.82 |
| KRH11725 | Soybean | nucleus | 48.47 | 45.36 |
| KRH42968 | Soybean | nucleus | 47.96 | 45.04 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 49.87 | 45.01 |
| KRH59101 | Soybean | nucleus | 48.35 | 44.97 |
| Solyc02g071180.2.1 | Tomato | nucleus | 45.55 | 42.98 |
| PGSC0003DMT400007972 | Potato | nucleus | 45.17 | 42.46 |
| Solyc03g005750.2.1 | Tomato | nucleus | 43.89 | 40.93 |
| CDY61669 | Canola | nucleus | 37.02 | 39.32 |
| Zm00001d035703_P001 | Maize | nucleus | 13.36 | 38.89 |
| CDX78828 | Canola | nucleus | 33.72 | 37.97 |
| Zm00001d017358_P001 | Maize | nucleus | 5.09 | 36.36 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 37.79 | 35.57 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 9.54 | 35.38 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 37.4 | 33.49 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 36.77 | 33.33 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 36.9 | 33.22 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 36.77 | 33.22 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 35.88 | 33.22 |
| KXG33052 | Sorghum | nucleus | 34.73 | 33.17 |
| Os05t0566900-01 | Rice | extracellular | 35.62 | 32.86 |
| KXG22544 | Sorghum | nucleus | 35.5 | 32.59 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 37.66 | 32.53 |
| Zm00001d011517_P002 | Maize | nucleus | 34.22 | 32.02 |
| Zm00001d043962_P001 | Maize | nucleus | 33.84 | 31.59 |
| Zm00001d009591_P006 | Maize | nucleus | 33.97 | 31.16 |
| Os01t0663800-01 | Rice | plasma membrane | 33.59 | 31.02 |
| Zm00001d039041_P007 | Maize | nucleus | 35.24 | 30.71 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 32.95 | 30.65 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 32.82 | 30.61 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 36.64 | 30.41 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 33.46 | 30.23 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 31.3 | 30.22 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.27 | 29.02 |
| KXG22612 | Sorghum | nucleus | 30.53 | 28.85 |
| Zm00001d039138_P012 | Maize | nucleus | 30.28 | 28.71 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 5.47 | 28.1 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 30.03 | 27.93 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 29.52 | 27.23 |
| Os05t0581800-01 | Rice | nucleus | 29.13 | 26.88 |
| Zm00001d009683_P004 | Maize | nucleus | 28.88 | 26.67 |
| CDY08888 | Canola | nucleus | 19.47 | 26.52 |
| Zm00001d004950_P001 | Maize | nucleus | 10.31 | 26.13 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 27.48 | 25.06 |
| CDX76544 | Canola | nucleus | 17.81 | 24.6 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 26.08 | 24.03 |
| CDY24202 | Canola | nucleus | 13.87 | 19.33 |
| CDY22126 | Canola | nucleus | 20.1 | 19.29 |
| CDY43361 | Canola | nucleus | 13.99 | 19.0 |
| CDY28028 | Canola | nucleus | 19.08 | 18.56 |
| CDY35953 | Canola | nucleus | 19.08 | 18.4 |
| CDX97535 | Canola | nucleus | 17.3 | 15.76 |
| CDY65326 | Canola | nucleus | 16.79 | 15.51 |
| CDY53767 | Canola | nucleus | 12.09 | 15.45 |
| CDY39087 | Canola | nucleus | 17.05 | 15.35 |
| CDY33258 | Canola | nucleus | 16.92 | 15.27 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.29 | 13.64 |
| CDY53764 | Canola | extracellular, vacuole | 7.38 | 13.36 |
Protein Annotations
| EnsemblPlants:CDY15632 | EnsemblPlantsGene:GSBRNA2T00089823001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | ProteinID:CDY15632 | ProteinID:CDY15632.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EF0E53 | UniProt:A0A078FS08 | MapMan:35.2 | : |
Description
BnaA07g08030DBnaA07g08030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS08]
Coordinates
chrLK032056:+:6302..11004
Molecular Weight (calculated)
85421.3 Da
IEP (calculated)
5.506
GRAVY (calculated)
-0.920
Length
786 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSKVSL GGGGGRNDIP SGCRKIVQSL KEIVNSPEAE IYAMLKECNM DPNEAVHRLL SQDPFHEVKS KKEKKKETRD IPDSRLRGAN NAYNRGGRGT
101: SSRYAGRNGS TRFSSSGSGN FQGKSTDKKE SGTQGYTSSW SSASGVATNH QTTNSDSVVT ENKLPSAPSG DGISSSQSAS GHQTAWFGAP GKMSMADIVK
201: MGRPQNKTTN SQQNVNTRSE INHAQEVNAN HQVPVKDEWP SIEKPQAPNT SSVSVAPVES EMCSGPADFQ SDRVDQHLSD RLGDIHLAEN GPSENLGIDL
301: VQPDSVAGRN VQEDDSGVSS EFKDNQYTYQ TQSHPVEHHK DEDEVSSGSA ELQQLTVDDQ EASHEEDRPA VLIPNHLLIH TKECSQLSFG SFGSMTLSNN
401: AEETPDVAQQ VEHSDARNTE FYGDEHLGST ANGNMGHAPA AGNYDDSLES RPEVLKQENS ETAQENQYAF AQSEPGYAKQ QLNTAYDASQ INAQNQMQNL
501: ASLSNVMGYP HSVPNSLLAQ NARELEIQYA MQSRNNNNAS SLGGQSIPMP EALRGSGVPA TQQTQQTLPG ANLATGTALP QQLPMHPYSQ PTIPLAHFAN
601: MLGYPLMPQN YPYMPSAFPQ TFAGNSLYQQ QLAALLPQYK TNLSPSNLPH SATALNVGSA GNFPLNQQSA PPGTTMGYED AQYKESNHLL APQQQNENSA
701: MWHHGHGSRT MSGVPANTYY NLQAQQQQQL RQAQQQQHYG SHGYPNYYQS QTEVSHERQQ QNPRDGAGAQ AGQPSNQTQQ LWQNSY
101: SSRYAGRNGS TRFSSSGSGN FQGKSTDKKE SGTQGYTSSW SSASGVATNH QTTNSDSVVT ENKLPSAPSG DGISSSQSAS GHQTAWFGAP GKMSMADIVK
201: MGRPQNKTTN SQQNVNTRSE INHAQEVNAN HQVPVKDEWP SIEKPQAPNT SSVSVAPVES EMCSGPADFQ SDRVDQHLSD RLGDIHLAEN GPSENLGIDL
301: VQPDSVAGRN VQEDDSGVSS EFKDNQYTYQ TQSHPVEHHK DEDEVSSGSA ELQQLTVDDQ EASHEEDRPA VLIPNHLLIH TKECSQLSFG SFGSMTLSNN
401: AEETPDVAQQ VEHSDARNTE FYGDEHLGST ANGNMGHAPA AGNYDDSLES RPEVLKQENS ETAQENQYAF AQSEPGYAKQ QLNTAYDASQ INAQNQMQNL
501: ASLSNVMGYP HSVPNSLLAQ NARELEIQYA MQSRNNNNAS SLGGQSIPMP EALRGSGVPA TQQTQQTLPG ANLATGTALP QQLPMHPYSQ PTIPLAHFAN
601: MLGYPLMPQN YPYMPSAFPQ TFAGNSLYQQ QLAALLPQYK TNLSPSNLPH SATALNVGSA GNFPLNQQSA PPGTTMGYED AQYKESNHLL APQQQNENSA
701: MWHHGHGSRT MSGVPANTYY NLQAQQQQQL RQAQQQQHYG SHGYPNYYQS QTEVSHERQQ QNPRDGAGAQ AGQPSNQTQQ LWQNSY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.