Subcellular Localization
min:
: max
Winner_takes_all: vacuole, mitochondrion, plastid, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017358_P001 | Maize | nucleus | 62.09 | 86.36 |
| Zm00001d035703_P001 | Maize | nucleus | 72.55 | 41.11 |
| Zm00001d004950_P001 | Maize | nucleus | 68.63 | 33.87 |
| Solyc09g018250.2.1 | Tomato | plastid | 19.61 | 28.3 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 26.8 | 19.34 |
| Zm00001d043962_P001 | Maize | nucleus | 73.2 | 13.3 |
| KXG33052 | Sorghum | nucleus | 67.97 | 12.64 |
| Zm00001d011517_P002 | Maize | nucleus | 67.97 | 12.38 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 53.59 | 10.07 |
| Os01t0663800-01 | Rice | plasma membrane | 54.9 | 9.87 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 53.59 | 9.73 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 52.94 | 9.59 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 53.59 | 9.43 |
| Solyc02g071180.2.1 | Tomato | nucleus | 41.83 | 7.68 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 41.83 | 7.66 |
| PGSC0003DMT400007972 | Potato | nucleus | 41.83 | 7.66 |
| Zm00001d009591_P006 | Maize | nucleus | 42.48 | 7.58 |
| Solyc03g005750.2.1 | Tomato | nucleus | 41.18 | 7.47 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 42.48 | 7.46 |
| CDX99817 | Canola | nucleus | 30.07 | 7.42 |
| Zm00001d039138_P012 | Maize | nucleus | 39.22 | 7.24 |
| Zm00001d039041_P007 | Maize | nucleus | 42.48 | 7.21 |
| KRH36716 | Soybean | nucleus | 39.22 | 7.16 |
| KRH11725 | Soybean | nucleus | 39.22 | 7.14 |
| KRH59101 | Soybean | nucleus | 39.22 | 7.1 |
| KRH42968 | Soybean | nucleus | 37.91 | 6.93 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 37.91 | 6.83 |
| Zm00001d009683_P004 | Maize | nucleus | 37.91 | 6.82 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 39.87 | 6.7 |
| CDY61562 | Canola | nucleus | 33.33 | 6.69 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 37.25 | 6.49 |
| CDY48333 | Canola | nucleus | 34.64 | 6.44 |
| AT1G29370.1 | Thale cress | nucleus | 34.64 | 6.38 |
| Bra010832.1-P | Field mustard | nucleus | 33.99 | 6.33 |
| CDY43334 | Canola | nucleus | 33.99 | 6.33 |
| CDX90188 | Canola | nucleus | 33.99 | 6.33 |
| AT1G29350.1 | Thale cress | nucleus | 33.99 | 6.26 |
| Bra021900.1-P | Field mustard | nucleus | 32.68 | 6.09 |
| Bra032310.1-P | Field mustard | nucleus | 33.33 | 5.94 |
| CDY43685 | Canola | nucleus | 32.03 | 5.9 |
| CDX94662 | Canola | nucleus | 29.41 | 5.59 |
| Bra022970.1-P | Field mustard | nucleus | 29.41 | 5.56 |
| CDX84653 | Canola | nucleus | 29.41 | 5.54 |
| Bra030134.1-P | Field mustard | nucleus | 28.1 | 5.5 |
| CDY15632 | Canola | nucleus | 28.1 | 5.47 |
| CDX78828 | Canola | nucleus | 23.53 | 5.16 |
| CDY61669 | Canola | nucleus | 24.18 | 5.0 |
| AT4G18150.1 | Thale cress | nucleus | 23.53 | 4.75 |
| Bra013287.1-P | Field mustard | nucleus | 23.53 | 4.62 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 18.3 | 4.18 |
| CDY11787 | Canola | nucleus | 18.95 | 3.93 |
| AT5G46380.2 | Thale cress | nucleus | 14.38 | 3.32 |
| Zm00001d044979_P010 | Maize | nucleus | 17.65 | 3.17 |
| Zm00001d029487_P001 | Maize | nucleus | 15.03 | 3.12 |
| Zm00001d050112_P011 | Maize | nucleus | 16.99 | 3.07 |
| Zm00001d037122_P009 | Maize | nucleus | 16.99 | 3.02 |
| CDX76544 | Canola | nucleus | 7.19 | 1.93 |
| Bra021022.1-P | Field mustard | nucleus | 7.19 | 1.77 |
| CDY08888 | Canola | nucleus | 6.54 | 1.73 |
| CDY61561 | Canola | cytosol | 0.65 | 1.52 |
| Zm00001d050118_P001 | Maize | mitochondrion | 0.0 | 0.0 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 0.0 | 0.0 |
| KRH38470 | Soybean | endoplasmic reticulum | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d035814_P001 | EnsemblPlants:Zm00001d035814_T001 | EnsemblPlantsGene:Zm00001d035814 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF35 | ProteinID:AQK79725.1 |
| SEG:seg | UniParc:UPI0008436D9B | UniProt:A0A1D6LIW7 | MapMan:35.2 | : | : |
Description
GBF-interacting protein 1
Coordinates
chr6:-:51725030..51725850
Molecular Weight (calculated)
16628.4 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.279
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYPMPQYKS SPPASTLPQP SSLSGYGGFG SANNIPGNFS QNQGAVAAPT TLGFDEALGT QFKHPNIMQH YSSCMRFSCS YFCFGGSFHS DIFLFPYQSD
101: NSAMWLHGGA GSRTISAVPP GNLYGFQGQS QHGGFRQAHH PSQYGFIFFL VTF
101: NSAMWLHGGA GSRTISAVPP GNLYGFQGQS QHGGFRQAHH PSQYGFIFFL VTF
001: MKTYILVWSC MMSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS
201: FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL
301: ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ
401: SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA
501: ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS
601: GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.