Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 3
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 62.26 | 31.13 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 28.3 | 19.61 |
| Zm00001d035703_P001 | Maize | nucleus | 44.34 | 17.41 |
| Zm00001d017358_P001 | Maize | nucleus | 17.92 | 17.27 |
| Solyc03g005750.2.1 | Tomato | nucleus | 93.4 | 11.74 |
| Solyc02g071180.2.1 | Tomato | nucleus | 69.81 | 8.88 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 69.81 | 8.5 |
| CDX99817 | Canola | nucleus | 48.11 | 8.23 |
| Zm00001d004950_P001 | Maize | nucleus | 22.64 | 7.74 |
| CDX90188 | Canola | nucleus | 58.49 | 7.54 |
| KRH42968 | Soybean | nucleus | 59.43 | 7.53 |
| Bra010832.1-P | Field mustard | nucleus | 57.55 | 7.42 |
| KRH59101 | Soybean | nucleus | 58.49 | 7.34 |
| CDY11787 | Canola | nucleus | 50.94 | 7.33 |
| CDY43334 | Canola | nucleus | 56.6 | 7.3 |
| AT1G29370.1 | Thale cress | nucleus | 55.66 | 7.1 |
| AT1G29350.1 | Thale cress | nucleus | 55.66 | 7.1 |
| CDX94662 | Canola | nucleus | 53.77 | 7.08 |
| KRH36716 | Soybean | nucleus | 55.66 | 7.04 |
| CDY61562 | Canola | nucleus | 50.0 | 6.96 |
| CDY48333 | Canola | nucleus | 53.77 | 6.93 |
| Bra030134.1-P | Field mustard | nucleus | 50.94 | 6.91 |
| KRH11725 | Soybean | nucleus | 54.72 | 6.9 |
| CDY15632 | Canola | nucleus | 50.94 | 6.87 |
| Bra021900.1-P | Field mustard | nucleus | 50.94 | 6.58 |
| Bra022970.1-P | Field mustard | nucleus | 50.0 | 6.55 |
| CDX84653 | Canola | nucleus | 50.0 | 6.52 |
| CDY43685 | Canola | nucleus | 50.94 | 6.51 |
| CDX78828 | Canola | nucleus | 42.45 | 6.45 |
| KXG33052 | Sorghum | nucleus | 50.0 | 6.44 |
| Bra032310.1-P | Field mustard | nucleus | 51.89 | 6.4 |
| Os01t0663800-01 | Rice | plasma membrane | 50.94 | 6.35 |
| Zm00001d011517_P002 | Maize | nucleus | 50.0 | 6.31 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 45.28 | 5.9 |
| Zm00001d043962_P001 | Maize | nucleus | 46.23 | 5.82 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 46.23 | 5.81 |
| CDY61669 | Canola | nucleus | 40.57 | 5.81 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 46.23 | 5.8 |
| Bra013287.1-P | Field mustard | nucleus | 42.45 | 5.77 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 45.28 | 5.54 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 45.28 | 5.52 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 45.28 | 5.52 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 43.4 | 5.51 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 45.28 | 5.5 |
| AT4G18150.1 | Thale cress | nucleus | 38.68 | 5.41 |
| KXG22544 | Sorghum | nucleus | 43.4 | 5.37 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 43.4 | 5.24 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 44.34 | 5.16 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 41.51 | 5.16 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 41.51 | 5.16 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 41.51 | 5.1 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 40.57 | 5.09 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 40.57 | 5.06 |
| Os05t0566900-01 | Rice | extracellular | 40.57 | 5.05 |
| Zm00001d009591_P006 | Maize | nucleus | 40.57 | 5.02 |
| Zm00001d009683_P004 | Maize | nucleus | 39.62 | 4.94 |
| KXG22612 | Sorghum | nucleus | 38.68 | 4.93 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 43.4 | 4.86 |
| Zm00001d039138_P012 | Maize | nucleus | 37.74 | 4.83 |
| Os05t0581800-01 | Rice | nucleus | 36.79 | 4.58 |
| Zm00001d039041_P007 | Maize | nucleus | 38.68 | 4.55 |
| CDX76544 | Canola | nucleus | 21.7 | 4.04 |
| CDY08888 | Canola | nucleus | 20.75 | 3.81 |
| Bra021022.1-P | Field mustard | nucleus | 21.7 | 3.7 |
| Solyc05g018750.2.1 | Tomato | nucleus | 21.7 | 2.82 |
| Solyc07g045230.2.1 | Tomato | nucleus | 19.81 | 2.4 |
| Solyc12g049230.1.1 | Tomato | nucleus | 16.98 | 2.28 |
| AT5G46380.2 | Thale cress | nucleus | 13.21 | 2.11 |
| CDY61561 | Canola | cytosol | 0.94 | 1.52 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 0.94 | 0.45 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 1.89 | 0.3 |
| KRH38470 | Soybean | endoplasmic reticulum | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc09g018250.2.1 | EnsemblPlantsGene:Solyc09g018250.2 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | SEG:seg | UniParc:UPI000276C115 |
| UniProt:K4CS91 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:13892088..13892504
Molecular Weight (calculated)
11438.1 Da
IEP (calculated)
8.222
GRAVY (calculated)
-0.851
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLVVGAAC LKCSNENSAL WLHGHGSRTM PTVPANTYYG FQGQNQQTGG FRQGQQPSQS YGSLGGYPHF YNSQAGISLD QQQQENLRDG SLSGSQGQPK
101: QSQQQL
101: QSQQQL
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.