Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038015.1-P | Field mustard | nucleus | 91.38 | 92.28 |
| CDY53764 | Canola | extracellular, vacuole | 60.0 | 85.02 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 15.28 | 71.21 |
| AT1G55820.1 | Thale cress | nucleus | 57.89 | 61.91 |
| GSMUA_Achr1P09430_001 | Banana | cytosol | 6.34 | 43.82 |
| Os09t0261400-01 | Rice | plasma membrane | 4.55 | 35.0 |
| CDY61561 | Canola | cytosol | 3.41 | 31.82 |
| CDY43361 | Canola | nucleus | 28.29 | 30.05 |
| CDY24202 | Canola | nucleus | 27.48 | 29.96 |
| CDY22126 | Canola | nucleus | 23.09 | 17.34 |
| CDY28028 | Canola | nucleus | 22.44 | 17.08 |
| CDY35953 | Canola | nucleus | 21.95 | 16.56 |
| CDX76544 | Canola | nucleus | 12.85 | 13.88 |
| CDY08888 | Canola | nucleus | 12.36 | 13.17 |
| CDX78828 | Canola | nucleus | 14.8 | 13.04 |
| CDY61669 | Canola | nucleus | 15.61 | 12.97 |
| CDY15632 | Canola | nucleus | 15.45 | 12.09 |
| CDX84653 | Canola | nucleus | 15.45 | 11.69 |
| CDX94662 | Canola | nucleus | 15.28 | 11.68 |
| CDY43334 | Canola | nucleus | 15.45 | 11.56 |
| CDY43685 | Canola | nucleus | 15.45 | 11.45 |
| CDY48333 | Canola | nucleus | 15.28 | 11.42 |
| CDX90188 | Canola | nucleus | 15.12 | 11.31 |
| CDX97535 | Canola | nucleus | 15.77 | 11.24 |
| CDY65326 | Canola | nucleus | 15.45 | 11.16 |
| CDY33258 | Canola | nucleus | 15.45 | 10.91 |
| CDY39087 | Canola | nucleus | 15.28 | 10.77 |
| CDY61562 | Canola | nucleus | 12.03 | 9.71 |
| CDX99817 | Canola | nucleus | 9.11 | 9.03 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 9.11 | 8.36 |
| CDY11787 | Canola | nucleus | 7.8 | 6.51 |
Protein Annotations
| EnsemblPlants:CDY53767 | EnsemblPlantsGene:GSBRNA2T00011352001 | InterPro:GIP1 | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF30 | PFAM:PF06972 |
| ProteinID:CDY53767 | ProteinID:CDY53767.1 | SEG:seg | UniParc:UPI0004EEA74A | UniProt:A0A078IUT2 | MapMan:35.1 |
Description
BnaCnng25590DBnaCnng25590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUT2]
Coordinates
chrLK033234:-:64447..67917
Molecular Weight (calculated)
65906.4 Da
IEP (calculated)
6.836
GRAVY (calculated)
-0.510
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKSLGDGGS ARVSIPRSLR ETVQSIREMT GKQHSDEDIY AVYKESFNDP FETAQKLRFL DTFHENLVPI NQASARTGRR NFASSNTYHG SNGRSSSFKR
101: ESGSNHVTGG SRPSLPNTNN RARNPTVPRA TKVPAPSGVS NHKVEDDFTA TVNKGVAEKL PLSKSISFSE DAVKPETSKA NSEQVAPPVS VSVVQNHTQD
201: VISAQPDVNN QPAELQSSTF GRQDPSLISA SHCSNHSDQV TGNETASKKG KARSLLKLDV GERSHVTFPL HLQVADELQN GLTFGSFDSN FVKELSSTYG
301: ASGGDDSDFK SSHGTGDDER DSSPTTNGIH AVASARGASS YFEDDNGIPN SAPGALPNTQ PHQIAYGQDA PFSVFGLVPS FSALGQPLGN SNAPAMSLVS
401: NPPGQSSIAA VSQQATNLFG QQYPPSFFPY GPYYPQFYMP PPYIHQFLGP NGIPQQSYFP PGAAIAAPTH IAPVGDNENP PTTNPSQHAS STVVTHTPSA
501: TALNSIHSEE RTSPMTGNAA AWIGQGLGNL QMSQMYNLAL QGQPLGFPVV QAGHRGLMGI QTLTPLPPYE KLMMPSFICI LVQTYIRYDL AESAFVFSSV
601: FRKKKTTLLY ETNTA
101: ESGSNHVTGG SRPSLPNTNN RARNPTVPRA TKVPAPSGVS NHKVEDDFTA TVNKGVAEKL PLSKSISFSE DAVKPETSKA NSEQVAPPVS VSVVQNHTQD
201: VISAQPDVNN QPAELQSSTF GRQDPSLISA SHCSNHSDQV TGNETASKKG KARSLLKLDV GERSHVTFPL HLQVADELQN GLTFGSFDSN FVKELSSTYG
301: ASGGDDSDFK SSHGTGDDER DSSPTTNGIH AVASARGASS YFEDDNGIPN SAPGALPNTQ PHQIAYGQDA PFSVFGLVPS FSALGQPLGN SNAPAMSLVS
401: NPPGQSSIAA VSQQATNLFG QQYPPSFFPY GPYYPQFYMP PPYIHQFLGP NGIPQQSYFP PGAAIAAPTH IAPVGDNENP PTTNPSQHAS STVVTHTPSA
501: TALNSIHSEE RTSPMTGNAA AWIGQGLGNL QMSQMYNLAL QGQPLGFPVV QAGHRGLMGI QTLTPLPPYE KLMMPSFICI LVQTYIRYDL AESAFVFSSV
601: FRKKKTTLLY ETNTA
001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
Arabidopsis Description
GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.