Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97535 | Canola | nucleus | 95.42 | 94.09 |
| Bra027380.1-P | Field mustard | nucleus | 97.06 | 91.57 |
| CDY33258 | Canola | nucleus | 79.55 | 77.73 |
| CDY39087 | Canola | nucleus | 78.85 | 76.86 |
| AT3G13990.1 | Thale cress | nucleus | 75.79 | 76.06 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 17.16 | 57.03 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 49.59 | 52.16 |
| KRH47571 | Soybean | nucleus | 49.59 | 48.9 |
| KRH06147 | Soybean | nucleus | 48.77 | 48.26 |
| Solyc12g049230.1.1 | Tomato | nucleus | 42.07 | 45.37 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.6 | 37.69 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.32 | 33.33 |
| EER88029 | Sorghum | nucleus | 31.61 | 31.32 |
| Zm00001d044979_P010 | Maize | nucleus | 31.02 | 30.99 |
| Os06t0206100-01 | Rice | nucleus | 30.79 | 30.68 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 30.79 | 30.25 |
| Zm00001d037122_P009 | Maize | nucleus | 30.32 | 30.0 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 30.2 | 29.81 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 30.43 | 29.8 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 30.79 | 29.57 |
| Os03t0411000-01 | Rice | nucleus | 26.32 | 29.05 |
| CDY61561 | Canola | cytosol | 2.23 | 28.79 |
| KXG39164 | Sorghum | nucleus | 25.85 | 28.06 |
| Zm00001d029487_P001 | Maize | nucleus | 23.74 | 27.37 |
| CDY28028 | Canola | nucleus | 19.39 | 20.42 |
| CDY22126 | Canola | nucleus | 19.15 | 19.9 |
| CDY35953 | Canola | nucleus | 18.92 | 19.75 |
| CDY24202 | Canola | nucleus | 12.46 | 18.79 |
| CDY43361 | Canola | nucleus | 12.69 | 18.65 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.82 | 18.18 |
| CDY08888 | Canola | nucleus | 11.99 | 17.68 |
| CDX78828 | Canola | nucleus | 14.45 | 17.62 |
| CDY61669 | Canola | nucleus | 14.81 | 17.03 |
| CDY43685 | Canola | nucleus | 16.57 | 16.99 |
| CDX84653 | Canola | nucleus | 16.22 | 16.97 |
| CDY43334 | Canola | nucleus | 16.33 | 16.91 |
| CDY15632 | Canola | nucleus | 15.51 | 16.79 |
| CDX90188 | Canola | nucleus | 16.22 | 16.79 |
| CDX94662 | Canola | nucleus | 15.63 | 16.52 |
| CDX76544 | Canola | nucleus | 11.05 | 16.52 |
| CDY61562 | Canola | nucleus | 14.57 | 16.27 |
| CDY48333 | Canola | nucleus | 15.28 | 15.8 |
| CDY53767 | Canola | nucleus | 11.16 | 15.45 |
| CDY53764 | Canola | extracellular, vacuole | 7.87 | 15.44 |
| CDX99817 | Canola | nucleus | 10.22 | 14.03 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 10.34 | 13.13 |
| CDY11787 | Canola | nucleus | 7.99 | 9.23 |
Protein Annotations
| EnsemblPlants:CDY65326 | EnsemblPlantsGene:GSBRNA2T00045615001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | ProteinID:CDY65326 | ProteinID:CDY65326.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EF38D0 | UniProt:A0A078JHY8 | MapMan:35.2 | : |
Description
BnaCnng46620DBnaCnng46620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHY8]
Coordinates
chrLK034736:-:13126..17780
Molecular Weight (calculated)
92832.4 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.885
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSRTGGN RAMDDEERKL IESIREIVGN HTDADIHAAL KEADMNADEA VQKLIHQDPF HEVKRRRDRK KEVAVLVEPA DEKKPLESVT SEVNVRTQPE
101: HNARRGGHSR NFPRNAAQQN EFPGNPAPRS KREFRVVRDN RSNPNVGEEL KHTSAHQSSG LNISKAMASQ NQKGLTGGVG NRRSPGDQDF SKDCNAVADV
201: RLRDAEIAPF HHPTRKELSD GKQTARSVTL PSTNSVIGVY PSSTDPVHVP SPVSRSSPVG AIKREVRGGD FGGKPSENVG KDPSASTGSL SGSSIRKIGT
301: PNAHRSSSPN SKIDQVSQTT LRESVLPSCG EKNRPVLNRQ RGNRGSQNAR TQQVGGHTKG VSQNKEWKPK PIHKSVGHNP GVIGTPAKSQ ACRSDDISLN
401: LESEAVKVQD KLSHVHISES QNVIIADHIR VPETDRCQLT FGSFVQEFSS SVNSESAFQE SCSLEELRET DRSSPVSPPE TVTDGPGDKP IDILDDHVRV
501: SESDSRVPVA SEHQLPEEKE AHRSDNLDEY SEIQLLSRNG PHYTPLEFEE QQDPPELQKA PAYGNHGSYD SPYENVRGQG LPSQQEQVLS TQMVNNGPSS
601: TIPMLQQQQQ QQQQASMQQM YSQVQVAHFP NLMPYRQFVS YVPQMPMPGY SGNPAAYAHP SNGNSYVLMP GGGSHPGSNG VKYGIQQFKP VPTGGPTGFG
701: TYNNNPNAYQ INTPNVVGNA MGLEDPSRMK YKDGNIYVQN PQQAETSDIW MQNPRDLSSL QSPPYYNVAG QTPHGAYLPS HTSHPSFNAA AQSPQMQFQG
801: LFHPPQPGAM ANQHHMGPGL GGNVGVVPSP PSQLGAYQQS QLGHPNWGAN F
101: HNARRGGHSR NFPRNAAQQN EFPGNPAPRS KREFRVVRDN RSNPNVGEEL KHTSAHQSSG LNISKAMASQ NQKGLTGGVG NRRSPGDQDF SKDCNAVADV
201: RLRDAEIAPF HHPTRKELSD GKQTARSVTL PSTNSVIGVY PSSTDPVHVP SPVSRSSPVG AIKREVRGGD FGGKPSENVG KDPSASTGSL SGSSIRKIGT
301: PNAHRSSSPN SKIDQVSQTT LRESVLPSCG EKNRPVLNRQ RGNRGSQNAR TQQVGGHTKG VSQNKEWKPK PIHKSVGHNP GVIGTPAKSQ ACRSDDISLN
401: LESEAVKVQD KLSHVHISES QNVIIADHIR VPETDRCQLT FGSFVQEFSS SVNSESAFQE SCSLEELRET DRSSPVSPPE TVTDGPGDKP IDILDDHVRV
501: SESDSRVPVA SEHQLPEEKE AHRSDNLDEY SEIQLLSRNG PHYTPLEFEE QQDPPELQKA PAYGNHGSYD SPYENVRGQG LPSQQEQVLS TQMVNNGPSS
601: TIPMLQQQQQ QQQQASMQQM YSQVQVAHFP NLMPYRQFVS YVPQMPMPGY SGNPAAYAHP SNGNSYVLMP GGGSHPGSNG VKYGIQQFKP VPTGGPTGFG
701: TYNNNPNAYQ INTPNVVGNA MGLEDPSRMK YKDGNIYVQN PQQAETSDIW MQNPRDLSSL QSPPYYNVAG QTPHGAYLPS HTSHPSFNAA AQSPQMQFQG
801: LFHPPQPGAM ANQHHMGPGL GGNVGVVPSP PSQLGAYQQS QLGHPNWGAN F
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.