Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 27.32 | 86.33 |
| KRH47571 | Soybean | nucleus | 68.85 | 64.54 |
| KRH06147 | Soybean | nucleus | 67.86 | 63.84 |
| Solyc12g049230.1.1 | Tomato | nucleus | 58.59 | 60.08 |
| AT3G13990.1 | Thale cress | nucleus | 53.77 | 51.3 |
| CDY65326 | Canola | nucleus | 52.16 | 49.59 |
| CDX97535 | Canola | nucleus | 52.78 | 49.48 |
| Bra021524.1-P | Field mustard | nucleus | 51.55 | 47.88 |
| CDY39087 | Canola | nucleus | 51.42 | 47.65 |
| CDY33258 | Canola | nucleus | 51.3 | 47.65 |
| Bra027380.1-P | Field mustard | nucleus | 52.41 | 47.01 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 48.58 | 46.29 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 38.44 | 40.18 |
| EER88029 | Sorghum | nucleus | 40.67 | 38.3 |
| Os06t0206100-01 | Rice | nucleus | 39.93 | 37.82 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 40.3 | 37.82 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 40.42 | 37.76 |
| Zm00001d044979_P010 | Maize | nucleus | 39.43 | 37.44 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 39.93 | 37.17 |
| Zm00001d037122_P009 | Maize | nucleus | 39.06 | 36.74 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 39.93 | 36.46 |
| Os03t0411000-01 | Rice | nucleus | 32.01 | 33.59 |
| Zm00001d029487_P001 | Maize | nucleus | 29.17 | 31.98 |
| KXG39164 | Sorghum | nucleus | 29.67 | 30.61 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 27.19 | 24.55 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 23.61 | 24.3 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 5.81 | 22.17 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 20.89 | 19.4 |
Protein Annotations
| ArrayExpress:VIT_09s0002g01530 | EMBL:FN596494 | EnsemblPlants:VIT_09s0002g01530.t01 | EnsemblPlantsGene:VIT_09s0002g01530 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 |
| ProteinID:CBI35892 | ProteinID:CBI35892.3 | SEG:seg | SUPFAM:SSF46934 | TIGR:TC66838 | UniParc:UPI0001BE4AB6 |
| UniProt:D7TZU6 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:1304561..1315852
Molecular Weight (calculated)
87430.4 Da
IEP (calculated)
8.326
GRAVY (calculated)
-0.743
Length
809 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSRMEGG TQILPARVRK TIQSIKEIVG NHSDADIYVT LRETNMDPNE TTQKLLYQDP FHEVKRKRDK KKESTGYKRP TEPRIYIENV GQGKFRSFPD
101: RNVRRGGYSR STVPGNAKTY QFYHSILLDA GIGREFRVVR DNRVNQNTNR DMKPVSPQLA TSVNEQVISN ISEKGNSTGT SNNQKPSSGR QSSQSLNGPT
201: DARPGIPQDA NSMKPNDSQP YSASLASNSS VVGVYSSSSD PVHVPSPDSR SSAIVGAIKR EVGVVGVRRQ STENSSDQPR QTTVPDHVIP SMPVNRSFLG
301: NQYGSRPHQQ PVGHQKAPQP NKEWKPKSSQ KSSHIIPGVI GTPAKSVSPR ADNSKDLESE TAKLQDKLSQ ASISENQNVI IAQHIRVPET DRCRLTFGSF
401: GADFASGFQA VGNADEPSAE PSASLSVSPP ESSSDDGSKQ VDLDDQYINS GTASPESGEA SEHQLPDKKE SSSPQNLENY ADIGLVRESS PSYTPESQQQ
501: QERHVLPSFP HAYDPQAGYD IPYFRPTMDE TVRGQGLPSP QEALASHTAN SIPASSIAMV QQQQQQPPVP QMYQQVHVPH FANLMPYRQF LSPVYVPPMA
601: MPGYSSNPAY SHPSNANSYL LMPGGSSHLG ANGLKYGIQQ LKPVPAGSPT GFGNFTNPTG YAINAPGVVG SATGLEDSSR LKYKDGNIYV PNPQAETSEI
701: WIQNPRELPG LQSAPYYNMP AQTPHAAYMP SHTGHASFNA AAAAAQSSHM QFPGLYHPPP QPAAMASPHH LGPPMGGNVG VGVAAAAPGP QVGAYQQPQL
801: GHLNWTTNF
101: RNVRRGGYSR STVPGNAKTY QFYHSILLDA GIGREFRVVR DNRVNQNTNR DMKPVSPQLA TSVNEQVISN ISEKGNSTGT SNNQKPSSGR QSSQSLNGPT
201: DARPGIPQDA NSMKPNDSQP YSASLASNSS VVGVYSSSSD PVHVPSPDSR SSAIVGAIKR EVGVVGVRRQ STENSSDQPR QTTVPDHVIP SMPVNRSFLG
301: NQYGSRPHQQ PVGHQKAPQP NKEWKPKSSQ KSSHIIPGVI GTPAKSVSPR ADNSKDLESE TAKLQDKLSQ ASISENQNVI IAQHIRVPET DRCRLTFGSF
401: GADFASGFQA VGNADEPSAE PSASLSVSPP ESSSDDGSKQ VDLDDQYINS GTASPESGEA SEHQLPDKKE SSSPQNLENY ADIGLVRESS PSYTPESQQQ
501: QERHVLPSFP HAYDPQAGYD IPYFRPTMDE TVRGQGLPSP QEALASHTAN SIPASSIAMV QQQQQQPPVP QMYQQVHVPH FANLMPYRQF LSPVYVPPMA
601: MPGYSSNPAY SHPSNANSYL LMPGGSSHLG ANGLKYGIQQ LKPVPAGSPT GFGNFTNPTG YAINAPGVVG SATGLEDSSR LKYKDGNIYV PNPQAETSEI
701: WIQNPRELPG LQSAPYYNMP AQTPHAAYMP SHTGHASFNA AAAAAQSSHM QFPGLYHPPP QPAAMASPHH LGPPMGGNVG VGVAAAAPGP QVGAYQQPQL
801: GHLNWTTNF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSQAYDNHGS YEFPYFSPAM DETVRVQGLP SPHEQGLSAH MLNNAPPSTI
601: PMLQQQQQAS MQQMYPQVHV SHFPNLMPYR QFLSPVYVPQ MPMPGYSGNP AAYAHPSNGN SYVLMPGGGS HLGSNGVKYG IHQQYKPVPT GGPAGFGTYN
701: NPNGYPTNPP NVVGNATGLE DPSRMINKHG NIYVPNPQAE TSEIWMQNPR DLSSLQSPYY NVAGQSPHGA YLSSHTAHQS FNPTAQSSHM QFQGLFHPSQ
801: PGTMANPHHM GPGLSGNVGV GVVPSPPPSQ IGTYQQSQLG HPNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.