Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 96.18 | 96.18 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 91.16 | 91.35 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 92.97 | 90.43 |
| Os03t0193225-01 | Rice | plasma membrane | 67.87 | 65.76 |
| EER92706 | Sorghum | plastid | 65.26 | 63.35 |
| Zm00001d028173_P002 | Maize | plastid | 64.86 | 63.09 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 21.29 | 26.77 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 23.9 | 24.54 |
| CDY19713 | Canola | cytosol | 12.85 | 21.05 |
| CDX99994 | Canola | peroxisome | 13.86 | 20.66 |
| KRH73863 | Soybean | nucleus | 21.49 | 20.62 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 21.89 | 19.75 |
| KRG98570 | Soybean | cytosol, nucleus, plastid | 20.48 | 18.58 |
| KRH46301 | Soybean | cytosol | 20.08 | 18.32 |
| CDX99996 | Canola | extracellular | 5.82 | 18.01 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 19.48 | 17.51 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 15.26 | 17.39 |
| TraesCS1D01G411200.1 | Wheat | nucleus | 21.29 | 16.83 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 13.86 | 12.3 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 15.86 | 11.99 |
| Bra009973.1-P | Field mustard | cytosol | 19.08 | 10.93 |
| CDX86173 | Canola | cytosol | 18.88 | 10.88 |
| Bra036105.1-P | Field mustard | nucleus | 17.47 | 10.43 |
| AT5G27230.1 | Thale cress | nucleus | 19.48 | 10.23 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 17.67 | 9.87 |
| PGSC0003DMT400036725 | Potato | nucleus | 4.02 | 7.35 |
| CDX99995 | Canola | cytosol, nucleus, peroxisome | 2.61 | 2.71 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 2.41 | 2.51 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G265900.1 | EnsemblPlantsGene:TraesCS4D01G265900 | InterPro:Frigida | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF5 | PFAM:PF07899 |
| SEG:seg | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:435968511..435973925
Molecular Weight (calculated)
53442.7 Da
IEP (calculated)
8.930
GRAVY (calculated)
-0.196
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEREPNPS VLDAVASLQT YSTALSAFTS AWRSLYSDAT TIDSTLASRL EGFSQLELLC SGMDGPGLRA YLAEHRDELR DPARSLDAAL LVAPDPGLLV
101: LAAAAGFCRS PPTNGKADGE SKVSCRLLID LLDRIRALGV KPSPEAREEA RAVAADWKRS KRIEEQSLFK NETIAFLLLI GVFGLVEDVG GAAQVLDLVV
201: SISSRERAVE IFLGLGLDLD KHIPVLTQAM INKGKQLDAV KFIQALNLVH KYPLLPILRS YVNDAKNAGN MIRIRGDGPA SQDAGDAKER TLLGALQKFI
301: KEHKLEELPI LEEANNRMTL LDLQSAERKR AANAAAAAAR EVSKNILDSR KRPQLPESAV QGSLGQNTRP VGTSSQELML RQSFPTVGVA NKYQAVSSHN
401: IVPATAPNPL LSSGNQRPIG IQNQTLAASS VQAQYSGGVA DFYNLASIRP GGLSVPGASA SSRSKLYSED PLAYVSRASD KKGSSYSYSL SNMSKYNT
101: LAAAAGFCRS PPTNGKADGE SKVSCRLLID LLDRIRALGV KPSPEAREEA RAVAADWKRS KRIEEQSLFK NETIAFLLLI GVFGLVEDVG GAAQVLDLVV
201: SISSRERAVE IFLGLGLDLD KHIPVLTQAM INKGKQLDAV KFIQALNLVH KYPLLPILRS YVNDAKNAGN MIRIRGDGPA SQDAGDAKER TLLGALQKFI
301: KEHKLEELPI LEEANNRMTL LDLQSAERKR AANAAAAAAR EVSKNILDSR KRPQLPESAV QGSLGQNTRP VGTSSQELML RQSFPTVGVA NKYQAVSSHN
401: IVPATAPNPL LSSGNQRPIG IQNQTLAASS VQAQYSGGVA DFYNLASIRP GGLSVPGASA SSRSKLYSED PLAYVSRASD KKGSSYSYSL SNMSKYNT
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.