Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G265900.1 | Wheat | nucleus | 65.76 | 67.87 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 65.56 | 67.67 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 63.81 | 66.0 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 62.06 | 62.3 |
| EER92706 | Sorghum | plastid | 61.09 | 61.21 |
| Zm00001d028173_P002 | Maize | plastid | 60.12 | 60.35 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 21.79 | 28.28 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 22.57 | 23.92 |
| KRH73863 | Soybean | nucleus | 22.18 | 21.97 |
| Os07t0173200-02 | Rice | cytosol | 22.57 | 21.72 |
| Os03t0794900-01 | Rice | nucleus | 22.18 | 20.73 |
| KRG98570 | Soybean | cytosol, nucleus, plastid | 21.98 | 20.58 |
| KRH46301 | Soybean | cytosol | 21.6 | 20.33 |
| CDY19713 | Canola | cytosol | 11.67 | 19.74 |
| Os03t0851400-01 | Rice | extracellular | 16.15 | 18.95 |
| CDX99994 | Canola | peroxisome | 12.26 | 18.86 |
| Os09t0248300-01 | Rice | cytosol | 19.65 | 18.63 |
| Os09t0248200-01 | Rice | cytosol | 19.46 | 18.35 |
| Os07t0592300-01 | Rice | nucleus | 20.04 | 16.94 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 13.23 | 15.56 |
| Os01t0181000-00 | Rice | nucleus | 17.32 | 14.96 |
| CDX99996 | Canola | extracellular | 4.47 | 14.29 |
| PGSC0003DMT400036725 | Potato | nucleus | 5.64 | 10.66 |
| Bra009973.1-P | Field mustard | cytosol | 17.7 | 10.47 |
| CDX86173 | Canola | cytosol | 17.51 | 10.42 |
| Bra036105.1-P | Field mustard | nucleus | 16.15 | 9.95 |
| AT5G27230.1 | Thale cress | nucleus | 17.9 | 9.7 |
| CDX80668 | Canola | cytosol, mitochondrion, plasma membrane | 16.73 | 9.64 |
| CDX99995 | Canola | cytosol, nucleus, peroxisome | 3.7 | 3.97 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 3.5 | 3.76 |
Protein Annotations
| MapMan:35.2 | EntrezGene:9272157 | ProteinID:ABF94427.1 | EMBL:AK069459 | ProteinID:BAH92025.1 | ProteinID:BAS82742.1 |
| ProteinID:EEE58486.1 | InterPro:Frigida | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | EnsemblPlantsGene:Os03g0193225 | EnsemblPlants:Os03t0193225-01 | PFAM:PF07899 |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF5 | UniProt:Q10QK0 | UniParc:UPI0000DB48A8 | RefSeq:XP_015628082.1 | SEG:seg |
Description
Frigida-like family protein. (Os03t0193225-01)
Coordinates
chr3:-:4862250..4866734
Molecular Weight (calculated)
54896.8 Da
IEP (calculated)
9.432
GRAVY (calculated)
-0.153
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGETPPSS SAAAAAPVLA ALASLQTYSS ALSAFTSAWR ALYSDATALD STLASRLEGF SELDLLCSAM DGPGLRAYLT EHRDALQDSS LPALDAALLV
101: APDPGRLVLS AAAGFCRAPP TEGAAKVACR LLVDLLDRLR ALGVKPSPEA RDEARAIAAD WKRSKRIGPQ AVLKKETIAF LLLVGAFGLV DDVGDASEVL
201: DLVVSVSGRE RAVEAFVGLG LDLEKHMPVF IHTMIKKGKQ LEAVKFIQAL NLVEKYPLLP VLRSYISDAA KAGNMIRIRG DDSACQTEAD AKERMLLGVL
301: QKFIKDQKLE ELPILEIVKQ RLAHLEKKSV ERKRAASAAI EAAHEVSKKI QKQEKQQQQV QSAMRSRVPG KAAQNSLSQN IHSVDSLSRP LMSSQSMGIS
401: GVLNLYQAAS SQNIIPAISP SPLSQHPVGI KNQTLNTPPV QTRYGGLADY YGLSSGRPRP DSVSPGSSVT SAHTSSRSKL YSADPLAAVS RASDKKGSSY
501: NYSLSSMSTY NPNP
101: APDPGRLVLS AAAGFCRAPP TEGAAKVACR LLVDLLDRLR ALGVKPSPEA RDEARAIAAD WKRSKRIGPQ AVLKKETIAF LLLVGAFGLV DDVGDASEVL
201: DLVVSVSGRE RAVEAFVGLG LDLEKHMPVF IHTMIKKGKQ LEAVKFIQAL NLVEKYPLLP VLRSYISDAA KAGNMIRIRG DDSACQTEAD AKERMLLGVL
301: QKFIKDQKLE ELPILEIVKQ RLAHLEKKSV ERKRAASAAI EAAHEVSKKI QKQEKQQQQV QSAMRSRVPG KAAQNSLSQN IHSVDSLSRP LMSSQSMGIS
401: GVLNLYQAAS SQNIIPAISP SPLSQHPVGI KNQTLNTPPV QTRYGGLADY YGLSSGRPRP DSVSPGSSVT SAHTSSRSKL YSADPLAAVS RASDKKGSSY
501: NYSLSSMSTY NPNP
001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ
Arabidopsis Description
FRL1FRIGIDA-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.