Factsheet for Os03t0851400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0778300-01
Os03t0851400-01
Os10t0564200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Os02t0778300-01	AT2G06005.1	19429606
AT4G00650.1	Os03t0851400-01	AT4G00650.1	17138694
AT4G00650.1	Os03t0851400-01	AT4G00650.1	19429606
AT4G00650.1	Os10t0564200-01	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93089	Sorghum	plastid	42.92	40.69
TraesCS4A01G329000.1	Wheat	plastid	45.21	40.0
TraesCS5B01G543400.1	Wheat	plastid	46.12	38.77
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	46.35	38.16
TraesCS5D01G544800.1	Wheat	mitochondrion	46.35	36.19
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	16.89	25.43
AT4G00650.1	Thale cress	plastid	16.21	22.61
CDY05835	Canola	cytosol, nucleus, plastid	17.35	21.17
Bra035723.1-P	Field mustard	plastid	17.35	20.77
Solyc03g117910.2.1	Tomato	plastid	15.98	20.29
PGSC0003DMT400084922	Potato	cytosol	14.61	16.16
Os03t0193225-01	Rice	plasma membrane	18.95	16.15
CDX71688	Canola	nucleus	20.78	15.56
Bra029192.1-P	Field mustard	nucleus, plastid	20.32	15.16
Solyc03g117930.2.1	Tomato	nucleus	20.32	15.14
CDY32645	Canola	nucleus	20.09	15.09
CDY38847	Canola	nucleus, plastid	20.32	14.93
KRH54046	Soybean	nucleus	19.86	14.7
Os09t0248200-01	Rice	cytosol	18.26	14.68
KRH63904	Soybean	nucleus	20.09	14.64
Os09t0248300-01	Rice	cytosol	18.04	14.58
Os07t0173200-02	Rice	cytosol	16.67	13.67
Os03t0794900-01	Rice	nucleus	16.67	13.27
Solyc12g042440.1.1	Tomato	nucleus, plastid	16.21	12.98
Os07t0592300-01	Rice	nucleus	16.67	12.01
PGSC0003DMT400080000	Potato	nucleus	20.55	11.95
Solyc04g072200.1.1	Tomato	cytosol	19.18	11.68
PGSC0003DMT400080001	Potato	nucleus	18.95	11.59
PGSC0003DMT400037427	Potato	nucleus, plastid	14.61	11.57
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	15.07	11.54
Os01t0181000-00	Rice	nucleus	15.53	11.43
PGSC0003DMT400094724	Potato	nucleus	19.63	11.03
VIT_19s0014g00060.t01	Wine grape	nucleus	5.02	6.94
Solyc03g117920.1.1	Tomato	nucleus	4.34	5.32

Protein Annotations

MapMan:35.1	EntrezGene:9269595	ProteinID:AAO20073.1	ProteinID:ABF99930.1	EMBL:AK241949	ProteinID:BAS87388.1
ProteinID:EAZ29326.1	InterPro:Frigida	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	EnsemblPlantsGene:Os03g0851400	EnsemblPlants:Os03t0851400-01	PFAM:PF07899
PANTHER:PTHR31791	PANTHER:PTHR31791:SF28	UniProt:Q851Y5	UniParc:UPI0000002794	RefSeq:XP_015631556.1	SEG:seg

Description

Hypothetical conserved gene. (Os03t0851400-01)

Coordinates

chr3:+:35840625..35843776

Molecular Weight (calculated)

47515.7 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.300

Length

438 amino acids

Sequence
(BLAST)

001: MAPPPPPPPA AAASPTPMLL ALTGLSTFSD RLVEFFNHWN SFIRYATAIS DDLPPLPAAD QPPNLADVAE PESTTPHSPV AVDEPESSTA PNPVAVAVAE
101: PKPAPVPQPE EPRPNRGGDP SAEHMGRICE RMGSGELLRF VISRMGDLSW LLRAVPPALR RAPNPAELVL RAIGRYYIRP GGRHTEAACE LLLLSYVRAG
201: CPLRPGQEAG DDHLRAEARE AALSWRSRLV RSKGRVAAAA ANDARGLLLL MAAFGVPVEF PSQEIFELLH AAGGLACAEV LKCSKHFLDK LRDVVAHMLN
301: RGIYHQTVAT IIAFELQDAF PLSAIATCVI ERVGRTKDQD SQEQHHLPGS KENDEEKLAL LRLLSKYVED PKQCSTENFS IADRIAMLEQ SLAKPHQAFT
401: GTKRKRTAQE DSVECTRGPK CSYTPAASSA SRNKNLEG

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.