Factsheet for Os10t0564200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0851400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	Os03t0851400-01	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G229500.1	Wheat	nucleus	67.26	71.29
EER94471	Sorghum	nucleus	66.67	69.57
HORVU1Hr1G055420.1	Barley	cytosol	64.58	69.11
Zm00001d029974_P001	Maize	nucleus	64.88	67.91
Zm00001d000045_P001	Maize	nucleus	63.99	67.61
TraesCS1D01G218500.1	Wheat	nucleus	63.1	66.46
TraesCS1A01G216300.1	Wheat	nucleus	62.5	65.83
Os08t0484700-01	Rice	nucleus	28.57	30.48
CDY42958	Canola	nucleus	26.79	29.03
Solyc08g007170.1.1	Tomato	nucleus	27.68	22.79
VIT_00s0204g00020.t01	Wine grape	nucleus	25.6	21.88
PGSC0003DMT400052836	Potato	nucleus	26.79	21.74
CDY35602	Canola	cytosol	25.89	21.01
Bra040110.1-P	Field mustard	cytosol	25.3	20.58
Os09t0558200-01	Rice	cytosol	19.35	19.35
AT4G17060.1	Thale cress	nucleus	13.39	14.52

Protein Annotations

EnsemblPlants:Os10t0564200-01	EnsemblPlantsGene:Os10g0564200	EntrezGene:4349408	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom
InterPro:Myb-like_dom	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837	PFscan:PS50090	ProteinID:AAG60191.1
ProteinID:AAP55043.1	ProteinID:BAF27246.1	ProteinID:BAT12091.1	RefSeq:XP_015612771.1	SEG:seg	SMART:SM00595
UniParc:UPI00000A8D77	UniProt:Q7XC32	MapMan:15.5.20	:	:	:

Description

Homeodomain-like containing protein. (Os10t0564200-01)

Coordinates

chr10:+:22284367..22285783

Molecular Weight (calculated)

35637.9 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.594

Length

336 amino acids

Sequence
(BLAST)

001: MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAVSSGG AGGSGRRLPP PCWTHEETLA LIEAYRDRWE GLRKGNLRAS DWDDVAGAVT ARCGRFPTAT
101: HKSGVQCRHK IEKLRKRYRA ERARAAGRSK GPKWPFFPLL HDLAGGGAPD PSPNPIIKIK SKGPAAAAAS PSPASPSPVS SPSSEEDEEE EAAADAGRSR
201: SLHGLISNGG SGSGLRFTIP KASRSKPVAQ REQPTAIKVE KSEEDAEAEA MAEVASALRA VGDKFLRMEE RRLEISLQIE KERMESEMKR TQTLLDAQQL
301: FVEAFLGKQQ HHHHHHKKAK VISAAAAAAT AAMDED

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.