Factsheet for Solyc08g007170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G17060.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G17060.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G17060.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G17060.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G17060.1	Solyc12g042440.1.1	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052836	Potato	nucleus	83.58	82.37
VIT_00s0204g00020.t01	Wine grape	nucleus	33.09	34.35
CDY42958	Canola	nucleus	25.25	33.23
Solyc01g088820.2.1	Tomato	plastid	25.98	32.22
TraesCS1D01G218500.1	Wheat	nucleus	23.53	30.09
TraesCS1A01G216300.1	Wheat	nucleus	23.53	30.09
TraesCS1B01G229500.1	Wheat	nucleus	23.04	29.65
Zm00001d000045_P001	Maize	nucleus	23.04	29.56
EER94471	Sorghum	nucleus	23.28	29.5
HORVU1Hr1G055420.1	Barley	cytosol	22.3	28.98
Zm00001d029974_P001	Maize	nucleus	22.79	28.97
Os10t0564200-01	Rice	nucleus	22.79	27.68
Solyc06g083430.1.1	Tomato	nucleus	21.57	27.08
Bra040110.1-P	Field mustard	cytosol	27.21	26.88
CDY35602	Canola	cytosol	26.96	26.57
Solyc01g096470.2.1	Tomato	nucleus	15.69	18.66
AT4G17060.1	Thale cress	nucleus	13.97	18.39

Protein Annotations

EnsemblPlants:Solyc08g007170.1.1	EnsemblPlantsGene:Solyc08g007170.1	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837	PFscan:PS50090	SEG:seg
SMART:SM00595	UniParc:UPI000276C440	UniProt:K4CIK4	MapMan:15.5.20	:	:

Description

No Description!

Coordinates

chr8:+:1738242..1739468

Molecular Weight (calculated)

45776.6 Da

IEP (calculated)

9.392

GRAVY (calculated)

-0.719

Length

408 amino acids

Sequence
(BLAST)

001: MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK
101: QRSLSCPTGR FFSSWFFFDN MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNGIDSPP NFMFNHALAA TKSEKINFAT
201: RIPNGYCSYM DMGSNKQEPP HDVEFSSGYR MKNGISMKAK RTGRIIGDVN GFDRGGGNFV MNPNFDCDEG SEYNGSNASD GFHIRNMGVS SSRRSYNSGN
301: VEQQPNLDSR FSPGLSKFGK KGGGGGGLGM KRGRDPVEEM VLSIKLLGEG FMKMEKMKME MAKEVEQMRM EMEMKRNEMI LESQKQIVEA FVKVLGEVHK
401: NKNAKPES

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.