Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G329000.1 | |
| TraesCS5B01G543400.1 | |
| TraesCS5D01G544800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17060.1 | TraesCS4A01G329000.1 | AT4G00650.1 | 19429606 |
| AT4G17060.1 | TraesCS5B01G543400.1 | AT4G00650.1 | 19429606 |
| AT4G17060.1 | TraesCS5D01G544800.1 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G216300.1 | Wheat | nucleus | 99.06 | 99.06 |
| TraesCS1B01G229500.1 | Wheat | nucleus | 89.66 | 90.22 |
| HORVU1Hr1G055420.1 | Barley | cytosol | 79.62 | 80.89 |
| EER94471 | Sorghum | nucleus | 68.65 | 68.01 |
| Zm00001d029974_P001 | Maize | nucleus | 68.34 | 67.91 |
| Zm00001d000045_P001 | Maize | nucleus | 66.14 | 66.35 |
| Os10t0564200-01 | Rice | nucleus | 66.46 | 63.1 |
| CDY42958 | Canola | nucleus | 28.84 | 29.68 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 24.45 | 25.66 |
| Solyc08g007170.1.1 | Tomato | nucleus | 30.09 | 23.53 |
| CDY35602 | Canola | cytosol | 30.09 | 23.19 |
| PGSC0003DMT400052836 | Potato | nucleus | 29.78 | 22.95 |
| VIT_00s0204g00020.t01 | Wine grape | nucleus | 28.21 | 22.9 |
| Bra040110.1-P | Field mustard | cytosol | 29.15 | 22.52 |
| TraesCS5D01G369500.2 | Wheat | nucleus | 21.0 | 19.14 |
| AT4G17060.1 | Thale cress | nucleus | 13.17 | 13.55 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G218500.1 | EnsemblPlantsGene:TraesCS1D01G218500 | InterPro:IPR006578 | InterPro:MADF-dom | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF3 |
| PFAM:PF13837 | SEG:seg | SMART:SM00595 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr1D:-:305228756..305229974
Molecular Weight (calculated)
33835.1 Da
IEP (calculated)
10.119
GRAVY (calculated)
-0.611
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSLKQD DVPSSPELPP LAAPGIAAAA AAAAAAASSG GGGGGAGAGG GSGRRLPPPC WTHEETLALI EAYRDKWEAL KKGNLRAADW DEVAGAVTAR
101: CGRFPTATYK SGVQCRHKIE KLRKRYRAER TRSMGRSKGP KWPFFPLLHD LAGGGVPDAS PNPIIKIKPR GNATPASPSP VSSPSSEDAG RSRSLHGLIS
201: NGGGGSGLRF TIPKASRTKP GVPREARPDR DRGEDDPEAE AMAEVASALR AVGEGFLRME ERRLELSLQM EKERMESEMK RTQALLDAQQ LFVEAFLGKQ
301: QPHHKKAKLV SSAAAMEED
101: CGRFPTATYK SGVQCRHKIE KLRKRYRAER TRSMGRSKGP KWPFFPLLHD LAGGGVPDAS PNPIIKIKPR GNATPASPSP VSSPSSEDAG RSRSLHGLIS
201: NGGGGSGLRF TIPKASRTKP GVPREARPDR DRGEDDPEAE AMAEVASALR AVGEGFLRME ERRLELSLQM EKERMESEMK RTQALLDAQQ LFVEAFLGKQ
301: QPHHKKAKLV SSAAAMEED
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.