Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G360100.1 | Wheat | nucleus | 93.71 | 93.45 |
| TraesCS5B01G362600.2 | Wheat | nucleus | 85.14 | 85.39 |
| HORVU5Hr1G088770.7 | Barley | nucleus | 65.71 | 63.01 |
| Zm00001d006331_P001 | Maize | cytosol | 51.43 | 53.89 |
| Os09t0558200-01 | Rice | cytosol | 51.71 | 53.87 |
| Zm00001d021389_P001 | Maize | cytosol | 50.0 | 52.24 |
| KXG36174 | Sorghum | cytosol | 50.29 | 52.23 |
| CDX83751 | Canola | nucleus | 14.57 | 38.64 |
| GSMUA_Achr4P05890_001 | Banana | nucleus | 33.71 | 38.56 |
| GSMUA_Achr9P22780_001 | Banana | mitochondrion | 34.86 | 35.47 |
| Bra007069.1-P | Field mustard | nucleus | 31.43 | 35.37 |
| CDY71514 | Canola | nucleus | 30.29 | 35.22 |
| CDX73485 | Canola | nucleus | 30.57 | 34.85 |
| AT3G54390.2 | Thale cress | nucleus | 29.43 | 33.01 |
| Solyc01g096470.2.1 | Tomato | nucleus | 31.71 | 32.36 |
| VIT_13s0084g00800.t01 | Wine grape | nucleus | 28.86 | 31.66 |
| KRH20709 | Soybean | nucleus | 28.57 | 30.67 |
| PGSC0003DMT400013829 | Potato | nucleus | 30.0 | 30.52 |
| KRH13365 | Soybean | nucleus | 28.57 | 29.94 |
| KRH30077 | Soybean | nucleus | 27.14 | 27.86 |
| KRH62829 | Soybean | nucleus | 28.57 | 27.47 |
| TraesCS1D01G218500.1 | Wheat | nucleus | 19.14 | 21.0 |
| TraesCS5D01G550500.1 | Wheat | nucleus | 17.14 | 19.74 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G369500.2 | EnsemblPlantsGene:TraesCS5D01G369500 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF7 | PFAM:PF13837 | SEG:seg |
| MapMan:15.5.20 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:444888032..444890209
Molecular Weight (calculated)
37220.5 Da
IEP (calculated)
6.337
GRAVY (calculated)
-0.695
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLPDGAAP PAPTPPQQQP KRDEWSESGI SRLLEAYEAK WLLRNRAKLK WSDWVDIAHD VSAHCSSSES AASKPGAAAG GTAKTPNQCK NKVESMKKRY
101: RAESAAATRA GVAGAASASG GPSWRFFGRM DGLLKGPAAG CSGQPQAQPE PSYDGMVQPR APLKAEPEVD AEADTALQQP PDTAGPPGAL SELLNADANG
201: SATVKAEKIV DLATHKESSR AADSDAANVS SPRSKEVEVE ANDDGAEEVD TLRKRKSPEL DVARSIELLA SSFLKIERAR LEVYRDTERM RAEAEVKKGE
301: MELRRTEIMA KTQLQIARLF AKRLKECVGG NGGSSSQVDT LAKKGENGSG
101: RAESAAATRA GVAGAASASG GPSWRFFGRM DGLLKGPAAG CSGQPQAQPE PSYDGMVQPR APLKAEPEVD AEADTALQQP PDTAGPPGAL SELLNADANG
201: SATVKAEKIV DLATHKESSR AADSDAANVS SPRSKEVEVE ANDDGAEEVD TLRKRKSPEL DVARSIELLA SSFLKIERAR LEVYRDTERM RAEAEVKKGE
301: MELRRTEIMA KTQLQIARLF AKRLKECVGG NGGSSSQVDT LAKKGENGSG
001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.