Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71514 | Canola | nucleus | 59.29 | 61.46 |
| CDX73485 | Canola | nucleus | 59.62 | 60.59 |
| Bra007069.1-P | Field mustard | nucleus | 59.62 | 59.81 |
| VIT_13s0084g00800.t01 | Wine grape | nucleus | 51.28 | 50.16 |
| KRH13365 | Soybean | nucleus | 52.56 | 49.1 |
| KRH20709 | Soybean | nucleus | 51.28 | 49.08 |
| KRH30077 | Soybean | nucleus | 52.24 | 47.8 |
| KRH62829 | Soybean | nucleus | 54.17 | 46.43 |
| Solyc01g096470.2.1 | Tomato | nucleus | 50.96 | 46.36 |
| PGSC0003DMT400013829 | Potato | nucleus | 50.0 | 45.35 |
| GSMUA_Achr4P05890_001 | Banana | nucleus | 36.86 | 37.58 |
| GSMUA_Achr9P22780_001 | Banana | mitochondrion | 36.54 | 33.14 |
| Os09t0558200-01 | Rice | cytosol | 33.33 | 30.95 |
| KXG36174 | Sorghum | cytosol | 33.33 | 30.86 |
| HORVU5Hr1G088750.1 | Barley | cytosol | 15.38 | 30.77 |
| Zm00001d021389_P001 | Maize | cytosol | 33.01 | 30.75 |
| Zm00001d006331_P001 | Maize | cytosol | 32.37 | 30.24 |
| TraesCS5A01G360100.1 | Wheat | nucleus | 33.33 | 29.63 |
| TraesCS5D01G369500.2 | Wheat | nucleus | 33.01 | 29.43 |
| TraesCS5B01G362600.2 | Wheat | nucleus | 32.69 | 29.23 |
| HORVU5Hr1G088770.7 | Barley | nucleus | 32.05 | 27.4 |
| AT2G44730.1 | Thale cress | nucleus | 22.44 | 18.82 |
| AT3G24860.1 | Thale cress | nucleus | 18.59 | 18.71 |
| AT4G17060.1 | Thale cress | nucleus | 12.5 | 12.58 |
Protein Annotations
| ArrayExpress:AT3G54390 | EnsemblPlants:AT3G54390.2 | EnsemblPlantsGene:AT3G54390 | EntrezGene:824605 | ncoils:Coil | PANTHER:PTHR31307 |
| PANTHER:PTHR31307:SF7 | PFAM:PF13837 | ProteinID:ANM66019.1 | RefSeq:AT3G54390 | RefSeq:AT3G54390-TAIR-G | RefSeq:NP_001327946.1 |
| SEG:seg | TAIR:AT3G54390 | UniParc:UPI0008492FB7 | UniProt:A0A1I9LTW1 | MapMan:15.5.20 | : |
Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
Coordinates
chr3:-:20137738..20139244
Molecular Weight (calculated)
35226.1 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.886
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNSIHSLKS HLKKKYMENG ESNQENLKSL NHDESLKKPS ASSVVVDRLK RDEWSEGAVS TLLEAYESKW VLRNRAKLKG QDWEDVAKHV SSRATHTKSP
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN
101: KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDHLLR GTQPQPQPQA VLPLNCSVPL LLLEPPLPAV AHPPQISYGS NGVGKIPKED GFKPENKPEK
201: DAEMDTDSST PVVKTKVRGK KVKRRYKEEK EEIAGSIRWL AEVVMRSERA RMETMKEIER MRAEAEAKRG ELDLKRTEIM ANTQLEIARI FAAAASSGQN
301: KGVDSSLRIG RN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.