Factsheet for GSMUA_Achr4P05890_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22780_001	Banana	mitochondrion	60.46	53.78
CDX83751	Canola	nucleus	17.65	40.91
CDY71514	Canola	nucleus	38.56	39.2
CDX73485	Canola	nucleus	39.22	39.09
Bra007069.1-P	Field mustard	nucleus	39.22	38.59
VIT_13s0084g00800.t01	Wine grape	nucleus	39.54	37.93
Os09t0558200-01	Rice	cytosol	40.85	37.2
AT3G54390.2	Thale cress	nucleus	37.58	36.86
KRH13365	Soybean	nucleus	39.54	36.23
KRH20709	Soybean	nucleus	38.56	36.2
Zm00001d021389_P001	Maize	cytosol	38.89	35.52
KRH30077	Soybean	nucleus	39.54	35.48
Zm00001d006331_P001	Maize	cytosol	38.56	35.33
KXG36174	Sorghum	cytosol	38.89	35.31
HORVU5Hr1G088750.1	Barley	cytosol	17.97	35.26
Solyc01g096470.2.1	Tomato	nucleus	38.89	34.69
PGSC0003DMT400013829	Potato	nucleus	38.89	34.59
TraesCS5B01G362600.2	Wheat	nucleus	39.22	34.38
TraesCS5D01G369500.2	Wheat	nucleus	38.56	33.71
TraesCS5A01G360100.1	Wheat	nucleus	38.24	33.33
KRH62829	Soybean	nucleus	39.54	33.24
HORVU5Hr1G088770.7	Barley	nucleus	37.58	31.51
GSMUA_Achr6P04170_001	Banana	nucleus	21.57	24.35
GSMUA_Achr11P...	Banana	plastid	23.86	22.6
GSMUA_Achr11P...	Banana	nucleus	13.07	18.26

Protein Annotations

EnsemblPlants:GSMUA_Achr4P05890_001	EnsemblPlants:GSMUA_Achr4T05890_001	EnsemblPlantsGene:GSMUA_Achr4G05890_001	Gene3D:1.10.10.60	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7
PFAM:PF13837	SEG:seg	UniParc:UPI0002950A9D	UniProt:M0SLF6	MapMan:15.5.20	:

Description

transcription factor like protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G05890_001]

Coordinates

chr4:-:4560565..4564428

Molecular Weight (calculated)

34342.4 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.938

Length

306 amino acids

Sequence
(BLAST)

001: MDDSRLLTCP DPAPRVTDKG KRDEWSEGGV LCLLEVYESK WTLRNRAKLK GSDWEDIARL VSMRCSGTKA LKTPTQCKNK IEAMKKRYRA ESAAAHDPNS
101: SSSWQFYARM DDLLKGTGNC SVFPKANHDI DLQALPKAEA EVEADGHLHD SNHDDGSNSM PINMNANADN IDDKKMENRG TDSNLSAPRG KKDATAEDGA
201: RDPGSSSKRR RVTGSEVADS IRFLAQSMLQ IEQARMEMYK DSERLRAEAE IKRGEMELKR TEIMASTQLQ IAKLFMKRIH QRSSKNQNPS LRSEIAILPR
301: RDGQGD

Best Arabidopsis Sequence Match ( AT3G54390.1 )
(BLAST)

001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.