Factsheet for Solyc03g117920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g00060.t01	Wine grape	nucleus	27.73	31.23
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	43.42	27.1
Solyc03g117930.2.1	Tomato	nucleus	39.5	23.98
Solyc12g042440.1.1	Tomato	nucleus, plastid	34.17	22.3
Solyc04g072200.1.1	Tomato	cytosol	43.14	21.42
KRH63904	Soybean	nucleus	25.77	15.31
KRH54046	Soybean	nucleus	24.37	14.7
CDX71688	Canola	nucleus	21.01	12.82
CDY32645	Canola	nucleus	20.73	12.69
Bra029192.1-P	Field mustard	nucleus, plastid	18.77	11.41
CDY38847	Canola	nucleus, plastid	19.05	11.41
Solyc11g071340.1.1	Tomato	nucleus	12.04	8.98
Solyc09g076050.2.1	Tomato	nucleus	11.48	7.98
Solyc06g082930.2.1	Tomato	nucleus	11.76	7.85
Solyc06g007640.2.1	Tomato	nucleus	11.76	7.84
EER93089	Sorghum	plastid	7.28	5.63
CDY05835	Canola	cytosol, nucleus, plastid	5.6	5.57
Bra035723.1-P	Field mustard	plastid	5.6	5.46
Solyc04g008840.2.1	Tomato	nucleus	8.12	4.82
Os03t0851400-01	Rice	extracellular	5.32	4.34
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	4.76	3.2
TraesCS4A01G329000.1	Wheat	plastid	3.92	2.83
TraesCS5B01G543400.1	Wheat	plastid	3.92	2.69
TraesCS5D01G544800.1	Wheat	mitochondrion	4.2	2.67
Solyc03g117910.2.1	Tomato	plastid	2.24	2.32
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	0.84	1.03
AT4G00650.1	Thale cress	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc03g117920.1.1	EnsemblPlantsGene:Solyc03g117920.1	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	SEG:seg	UniParc:UPI000276788F	UniProt:K4BLU3	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4BLU3]

Coordinates

chr3:+:66909311..66910481

Molecular Weight (calculated)

38268.5 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.599

Length

357 amino acids

Sequence
(BLAST)

001: MVKKNLEVDA VHIAYTFRID RFNPRRLLTS FLLNSRESLK KRNEKSEGSL AAVNEAKRKH LNDLTSVIKC LKCHDIDPSK LLPEWKINEK IMALEKEIRG
101: FDKHAERKRK SDETESSRGF RNREAKRSYN PPWVRQQRFD DHVDNNNTLP EGRTTGHLHG YTVSSTVLHG PSAGLIHENI AGSLVGTVGG VAMGVAGAGI
201: SPSGNGIHAG ISAGTDVVQQ GGPYAGGHGG TLVDSTPGQV GSHTDQLYDR SGNAAVNDSL ASCSNAYVPS SYLDGSKGLP NTTHTDAYRS PPYSECSTRL
301: PNAISGDAAG RSSASDIYQV ADTDTASELH MSSGVRAVDT VSSAASAHPS SNLHQPK

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.