Factsheet for VIT_19s0014g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0204g00020.t01
VIT_11s0016g01110.t01
VIT_19s0014g00030.t01
VIT_19s0014g00060.t01
VIT_19s0090g01700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	VIT_11s0016g01110.t01	AT2G06005.1	19429606
AT4G00650.1	VIT_19s0014g00030.t01	AT4G00650.1	17138694
AT4G00650.1	VIT_19s0014g00060.t01	AT4G00650.1	17138694
AT4G00650.1	VIT_19s0014g00030.t01	AT4G00650.1	19429606
AT4G00650.1	VIT_19s0014g00060.t01	AT4G00650.1	19429606
AT4G00650.1	VIT_00s0204g00020.t01	AT4G17060.1	19429606
AT4G00650.1	VIT_19s0090g01700.t01	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G00650.1	Thale cress	plastid	40.55	37.58
CDY05835	Canola	cytosol, nucleus, plastid	39.52	32.03
Bra035723.1-P	Field mustard	plastid	39.52	31.42
Solyc03g117910.2.1	Tomato	plastid	35.05	29.57
PGSC0003DMT400084922	Potato	cytosol	31.27	22.98
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	22.34	21.81
KRH54046	Soybean	nucleus	44.33	21.79
KRH63904	Soybean	nucleus	43.99	21.3
VIT_19s0090g01710.t01	Wine grape	cytosol	19.59	21.03
CDX71688	Canola	nucleus	40.55	20.17
Bra029192.1-P	Field mustard	nucleus, plastid	38.83	19.25
CDY32645	Canola	nucleus	37.8	18.87
CDY38847	Canola	nucleus, plastid	38.49	18.79
Solyc12g042440.1.1	Tomato	nucleus, plastid	34.71	18.46
PGSC0003DMT400037427	Potato	nucleus, plastid	35.05	18.44
Solyc03g117930.2.1	Tomato	nucleus	37.11	18.37
Os03t0851400-01	Rice	extracellular	25.43	16.89
TraesCS4A01G329000.1	Wheat	plastid	28.52	16.77
TraesCS5B01G543400.1	Wheat	plastid	28.52	15.93
EER93089	Sorghum	plastid	25.09	15.8
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	28.52	15.6
TraesCS5D01G544800.1	Wheat	mitochondrion	29.21	15.15
PGSC0003DMT400080000	Potato	nucleus	38.14	14.74
PGSC0003DMT400080001	Potato	nucleus	34.02	13.83
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	26.12	13.29
Solyc04g072200.1.1	Tomato	cytosol	31.96	12.93
PGSC0003DMT400094724	Potato	nucleus	34.36	12.82
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	23.37	12.08
VIT_05s0020g03470.t01	Wine grape	nucleus	20.62	11.49
VIT_07s0129g00610.t01	Wine grape	cytosol	21.99	11.09
VIT_19s0090g01700.t01	Wine grape	cytosol	14.43	10.91
VIT_11s0016g04070.t01	Wine grape	nucleus	16.84	9.19
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	5.84	3.89
Solyc03g117920.1.1	Tomato	nucleus	1.03	0.84
VIT_19s0014g00060.t01	Wine grape	nucleus	0.69	0.63

Protein Annotations

MapMan:35.1	ProteinID:CCB46180	ProteinID:CCB46180.1	UniProt:F6H2J3	EMBL:FN595229	InterPro:Frigida
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016787	GO:GO:0030154	GO:GO:0090305
PFAM:PF07899	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	UniParc:UPI00021086DD	ArrayExpress:VIT_19s0014g00030	EnsemblPlantsGene:VIT_19s0014g00030
EnsemblPlants:VIT_19s0014g00030.t01	SEG:seg	:	:	:	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6H2J3]

Coordinates

chr19:+:33097..34299

Molecular Weight (calculated)

31945.7 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.163

Length

291 amino acids

Sequence
(BLAST)

001: MAKTSMTLTV KEGQPPPPLC AAAVSGESGG GDPMRSVNEL RNLSTVLHAF RRRWDELQKH LDFIQDAIAS RSRELDASPQ HHQALASNTL ETSSPESADL
101: HSEPMPAQTS VSELGFLCGM MRSRGLRKYI ISHLSDVAKL REEVPAALKG APKPAKLVLE CIGRFFLQGS KAFGKATHMV PSRQASLLIL EFFLLSDCTE
201: MEPSVKEEAD LAAVTWRKRL INEGGVSNAS DIDARGLLLL VASFGIPALF RNEDLRNLIR LSCPKEISDA LRRSRFLLAR VPELKGLLSS Y

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.