Factsheet for PGSC0003DMT400094724

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036725
PGSC0003DMT400037427
PGSC0003DMT400048982
PGSC0003DMT400052836
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	PGSC0003DMT400048982	AT2G06005.1	19429606
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400052836	AT4G17060.1	19429606
AT4G00650.1	PGSC0003DMT400036725	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	67.05	91.43
PGSC0003DMT400036725	Potato	nucleus	16.92	48.53
PGSC0003DMT400080001	Potato	nucleus	42.44	46.23
PGSC0003DMT400080000	Potato	nucleus	43.46	45.02
PGSC0003DMT400084922	Potato	cytosol	18.08	35.61
PGSC0003DMT400037427	Potato	nucleus, plastid	25.13	35.44
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	12.82	34.36
AT4G00650.1	Thale cress	plastid	12.05	29.94
CDY05835	Canola	cytosol, nucleus, plastid	12.95	28.13
Bra035723.1-P	Field mustard	plastid	13.08	27.87
VIT_19s0014g00060.t01	Wine grape	nucleus	11.03	27.13
KRH54046	Soybean	nucleus	20.26	26.69
CDY32645	Canola	nucleus	19.87	26.59
CDX71688	Canola	nucleus	19.62	26.15
KRH63904	Soybean	nucleus	20.13	26.12
Bra029192.1-P	Field mustard	nucleus, plastid	19.36	25.72
CDY38847	Canola	nucleus, plastid	19.49	25.5
EER93089	Sorghum	plastid	12.18	20.56
Os03t0851400-01	Rice	extracellular	11.03	19.63
PGSC0003DMT400077344	Potato	nucleus	12.82	19.46
PGSC0003DMT400071153	Potato	nucleus	12.82	18.35
PGSC0003DMT400053214	Potato	cytosol	12.56	17.95
TraesCS4A01G329000.1	Wheat	plastid	10.9	17.17
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	11.67	17.11
TraesCS5B01G543400.1	Wheat	plastid	10.9	16.31
PGSC0003DMT400047832	Potato	nucleus	10.64	15.6
TraesCS5D01G544800.1	Wheat	mitochondrion	11.15	15.51
PGSC0003DMT400065090	Potato	nucleus	11.15	14.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400094724	EnsemblPlantsGene:PGSC0003DMG400044295	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	PGSC:PGSC0003DMG400044295	SEG:seg	UniParc:UPI0002950EE1	UniProt:M1DUR5
MapMan:35.1	:	:	:	:	:

Description

Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400044295]

Coordinates

chr6:+:55060699..55063041

Molecular Weight (calculated)

84962.7 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.517

Length

780 amino acids

Sequence
(BLAST)

001: MDTSATATPV SQPPLATQLQ PSHSQVSITA DNLRTFSYSL TAFQQCFNDL QRHINSIQTS INTMLLPPQP LPASSSPAVA TPASAPAPEP EPSWESDPSE
101: DLEEEEEVQQ EEKEVEGGEG EGEDEGEEVN SPHLELKLPR SELKSPRSEL KSPRSELEIF CETMDHCGLR KYMTTHISNF RGLREEVRKA LRLSPNPATL
201: VFNCIGKFYI TAGKKFANES PLGRGRKAKV LLLECFLLMI GICDKGVEIE NWVKEEAEQT ALAWLERMKS EGGKLQEIDA RGLLFFIGGF GIPDQFTNAN
301: IRTLLQVSNL KWSFDALKRS NALMAKLPEI IEEMVANKAV IKAVHIVYSV GMQDKFNPRT LLTTFIRESK KLFDNMNGSQ SAHQGNIVAK GKYLGDLRSI
401: IKCLRNHEVD PSKVLPGWEI SKRIASLEKE IAEFNKQIPD KKIAHGSHKR KKDGTVWLSN KEMKHSHSSN PWPPQHQRVA SNVISNNTLF EGGGTAGHNY
501: GYFMPPLVLH GPVAGSIHEN VGYSLAGPVR GVAIGGPGAG ISASANSIHA GMDVVPQGVP YAGGHRGNRV DSIPGQIGSH AGQFYGSAYR PSTPNTIAGD
601: TYRPAPFMES SKGLPNTIPG DSSRTPPYLE VSPGLPNTIP SNAYRPAPYM ESSKGLPNTI PGDSNRTPPY LEVSPGLPNT IPSNAYRPVP YMESSKGLPN
701: TIPGDANRPS PKLEGSMELP NTINGDAYRP PPYLEGSMGL PNTKPPPHQF VNTVPATELN QSSGSKAVDA HPSSSLYKQR

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.