Factsheet for PGSC0003DMT400071153

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006576
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	PGSC0003DMT400006576	AT1G15570.1	21798944
AT5G48385.1	PGSC0003DMT400077344	AT3G22440.1	21798944
AT5G48385.1	PGSC0003DMT400077344	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082930.2.1	Tomato	nucleus	94.31	96.07
PGSC0003DMT400053214	Potato	cytosol	77.98	77.84
KRH66282	Soybean	cytosol	66.42	66.3
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	68.26	66.07
KRH66280	Soybean	cytosol	65.69	65.81
KRH07289	Soybean	cytosol	65.87	65.75
CDY05684	Canola	cytosol	58.72	61.9
Bra020704.1-P	Field mustard	cytosol	58.72	61.66
Bra036176.1-P	Field mustard	cytosol	58.53	61.35
CDY48750	Canola	cytosol	59.27	61.29
CDY00066	Canola	cytosol	59.08	60.3
Bra037489.1-P	Field mustard	cytosol	60.0	59.78
AT5G48385.1	Thale cress	cytosol	60.18	58.78
GSMUA_Achr2P05710_001	Banana	nucleus	20.73	58.25
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	22.75	58.22
GSMUA_Achr8P29000_001	Banana	nucleus	54.13	54.63
GSMUA_Achr9P08130_001	Banana	cytosol	53.95	54.44
Zm00001d005107_P001	Maize	cytosol	53.21	54.31
HORVU5Hr1G051330.1	Barley	cytosol	53.58	54.17
EES02294	Sorghum	nucleus	53.21	54.1
TraesCS5A01G168100.1	Wheat	cytosol	53.39	53.99
Zm00001d019890_P001	Maize	nucleus	52.29	53.37
Zm00001d019892_P001	Maize	nucleus	39.63	53.33
TraesCS5D01G172300.2	Wheat	cytosol	54.13	53.25
TraesCS5B01G164900.2	Wheat	cytosol	53.58	52.71
Os09t0248300-01	Rice	cytosol	52.11	52.4
Os09t0248200-01	Rice	cytosol	51.56	51.56
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	55.23	51.19
PGSC0003DMT400065090	Potato	nucleus	35.41	31.74
PGSC0003DMT400077344	Potato	nucleus	27.16	28.79
PGSC0003DMT400047832	Potato	nucleus	24.59	25.19
CDX86307	Canola	nucleus	59.82	21.84
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	60.37	20.35
PGSC0003DMT400084922	Potato	cytosol	13.03	17.93
PGSC0003DMT400037427	Potato	nucleus, plastid	17.06	16.82
PGSC0003DMT400080000	Potato	nucleus	19.45	14.08
PGSC0003DMT400080001	Potato	nucleus	17.61	13.41
PGSC0003DMT400094724	Potato	nucleus	18.35	12.82
PGSC0003DMT400036725	Potato	nucleus	3.67	7.35
Bra037488.1-P	Field mustard	cytosol	0.18	0.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400071153	EnsemblPlantsGene:PGSC0003DMG400027670	EntrezGene:102591999	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	PGSC:PGSC0003DMG400027670	RefSeq:XP_006366815.1	SEG:seg
UniParc:UPI000296458F	UniProt:M1CN97	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027670]

Coordinates

chr6:+:57930170..57934923

Molecular Weight (calculated)

61136.4 Da

IEP (calculated)

5.950

GRAVY (calculated)

-0.480

Length

545 amino acids

Sequence
(BLAST)

001: MEDTQSVATL MDSTTSKIQQ LQKAFAELES HRAVTLNLQW KQLEEHFNGL QKSLKRRFTE LEDQEKEFET KIVQSTEILE KRQAAVIATE QASLQRLQEK
101: RDAAVSAISI ALEKHRNPCS VEPTVINCEV QDEPSVLEEK PDNVTEIGHV TGDTWKSFQD GVVEVKSYPE LVNLCRNMDS EGLHKFISDN RKNLAALREE
201: IPFALRASTN PASLVLDSLN GFYNSDVSIS DAKKDANLLG LRRTCIMLLE CLSTLLNTLD IDSILSIISE NIRGRAKAIA EEWNPKLDEL DVDANNGNSL
301: EAHAFLQLLA TFSISSNFNQ ENLSKLIPMV SRRRQTADLC RSLGLSDRMP GVIDVLINNG RHIDAVNLAF AFELTEQFPP VSLLKSYLNE ASKASTLLNS
401: GNASPTVQND VNEKELSALK AVLKCIEDHK LEEQYLVDPL QKRVHQLEKV KADKKKATEV AKPQSKRPRP NGVGNGPRVN NVVTEKNFYP RMTDRYPQPV
501: YDRPYAYPGP TSTHVPSFMG APAYNFSPGH DFFGNGYHYQ APYLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.