Factsheet for PGSC0003DMT400006576

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400004642
PGSC0003DMT400012249
PGSC0003DMT400019919	nucleus
PGSC0003DMT400029367
PGSC0003DMT400032084
PGSC0003DMT400040683
PGSC0003DMT400040761
PGSC0003DMT400042160
PGSC0003DMT400048460
PGSC0003DMT400052841
PGSC0003DMT400063189
PGSC0003DMT400065617
PGSC0003DMT400068387
PGSC0003DMT400071215
PGSC0003DMT400076291	nucleus
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	PGSC0003DMT400040683	AT1G57720.1	20706207
AT1G15570.1	PGSC0003DMT400065617	AT1G57720.1	20706207
AT1G15570.1	PGSC0003DMT400029367	AT1G61870.1	20706207
AT1G15570.1	PGSC0003DMT400032084	AT1G64180.1	21798944
AT1G15570.1	PGSC0003DMT400001218	AT2G27960.1	20706207
AT1G15570.1	PGSC0003DMT400048460	AT2G27960.1	20706207
AT1G15570.1	PGSC0003DMT400042160	AT3G11270.1	20706207
AT1G15570.1	PGSC0003DMT400040761	AT3G24140.1	21798944
AT1G15570.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G15570.1	PGSC0003DMT400077428	AT3G48750.1	16415207
AT1G15570.1	PGSC0003DMT400071215	AT3G54180.1	20706207
AT1G15570.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT1G15570.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT1G15570.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT1G15570.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT1G80370.1	PGSC0003DMT400019919	AT2G32710.1	20018602
AT1G80370.1	PGSC0003DMT400076291	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120440.1.1	Tomato	nucleus, plastid	93.52	94.54
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.56	64.78
Bra000822.1-P	Field mustard	nucleus	46.0	56.5
Bra031463.1-P	Field mustard	nucleus	44.71	56.1
CDY61993	Canola	nucleus	45.36	55.7
CDY48212	Canola	nucleus	44.92	55.17
Bra026756.1-P	Field mustard	plastid	46.87	53.06
CDY53304	Canola	plastid	46.65	52.81
VIT_09s0002g05240.t01	Wine grape	nucleus	55.72	52.65
CDX81722	Canola	nucleus, plastid	45.14	51.86
AT1G80370.1	Thale cress	plastid	50.97	51.19
CDY66415	Canola	nucleus	47.73	50.92
KRH47513	Soybean	nucleus	52.27	50.84
CDY36574	Canola	mitochondrion, nucleus	47.52	50.46
CDX79389	Canola	plastid	47.08	50.35
CDY38664	Canola	nucleus, plastid	49.03	49.89
CDY39984	Canola	plastid	48.16	49.78
Bra003563.1-P	Field mustard	plastid	46.44	49.77
CDY37592	Canola	mitochondrion, plastid	49.03	49.67
CDX96836	Canola	nucleus, plastid	47.08	49.55
CDX67944	Canola	plastid	46.22	49.54
Bra008477.1-P	Field mustard	plastid	48.81	49.45
Bra016654.1-P	Field mustard	nucleus, plastid	46.87	48.76
AT1G15570.1	Thale cress	nucleus, plastid	47.08	48.44
KRH44391	Soybean	nucleus	48.38	47.56
Bra026120.1-P	Field mustard	nucleus	47.73	47.42
CDX87305	Canola	plastid	47.3	47.4
Bra035186.1-P	Field mustard	plastid	47.08	47.19
OQU77084	Sorghum	nucleus	47.52	45.08
KXG23504	Sorghum	mitochondrion, nucleus	46.65	44.72
Os12t0502300-01	Rice	nucleus, plastid	47.3	44.69
PGSC0003DMT400067117	Potato	plastid	47.3	44.06
GSMUA_Achr3P25340_001	Banana	nucleus	50.32	42.99
TraesCS5A01G108500.2	Wheat	plastid	46.87	42.72
PGSC0003DMT400055428	Potato	nucleus	33.91	42.66
TraesCS3D01G529100.1	Wheat	plastid	46.22	42.38
TraesCSU01G054300.1	Wheat	nucleus	45.79	42.32
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	44.28	42.27
TraesCS5B01G114300.2	Wheat	plastid	46.22	42.21
TraesCS5D01G121100.2	Wheat	plastid	46.22	42.13
PGSC0003DMT400030222	Potato	nucleus	31.97	41.81
TraesCS3A01G523600.1	Wheat	plastid	45.36	41.42
Zm00001d014756_P006	Maize	nucleus, plastid	46.22	41.07
HORVU3Hr1G114440.21	Barley	nucleus, plastid	44.92	41.03
PGSC0003DMT400030176	Potato	nucleus	31.53	41.01
PGSC0003DMT400075380	Potato	nucleus	20.3	39.66
PGSC0003DMT400056625	Potato	nucleus	31.1	37.89
PGSC0003DMT400015424	Potato	plastid	34.56	33.9
PGSC0003DMT400093973	Potato	nucleus	21.17	29.7
PGSC0003DMT400003868	Potato	nucleus	26.13	27.94
PGSC0003DMT400025854	Potato	nucleus	26.13	27.44
PGSC0003DMT400048062	Potato	nucleus	25.05	26.91
PGSC0003DMT400018480	Potato	nucleus	23.54	25.65
PGSC0003DMT400058457	Potato	nucleus	23.11	25.6
PGSC0003DMT400015245	Potato	nucleus	23.97	25.28
PGSC0003DMT400072211	Potato	nucleus	22.89	22.84

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102586893	MapMan:13.1.1.1.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M0ZRM3
PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400002558	PGSC:PGSC0003DMG400002558	EnsemblPlants:PGSC0003DMT400006576	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00029622C2
RefSeq:XP_006343148.1	SEG:seg	:	:	:	:

Description

Cyclin A [Source:PGSC_GENE;Acc:PGSC0003DMG400002558]

Coordinates

chr3:-:59845221..59850204

Molecular Weight (calculated)

52372.2 Da

IEP (calculated)

9.063

GRAVY (calculated)

-0.273

Length

463 amino acids

Sequence
(BLAST)

001: MKRENSVISA AIEPMVRVTR SRAAVPEKSM VASTAELPKQ RGQKRALQIS SNPAILRVRN KNVPLTSCVE QKCRPVLKDV TNLCCNTSNG DCLNAVKVPK
101: KKKITRVGNS SMNVSNVTTS VDPEVYQFPT KLPPRSSLNQ SCSDRKSHEQ QGNPVEIKGF SRKGMVGKAV RDAAPSTSTK LDFIDIDSDK KDPLQCSQYA
201: HDIYNNLRVA EIIRRPQSNF METLQQDITE SMRAILVDWI VEVSEEYKLV PDTLYLAVHF IDLFLSQNYV ERKNLQLLGI TCMLVASKYE EMCGPRVEEF
301: CFITDNAYTK NEVLAMEILV LNFLGFRLST PTAKTFLRRF VRAAQASYKN PNLELEFLAN YLTELTLLEY GFLKFTPSAI AASSVFLARW TLDQSSHPWS
401: PTLEHYTYYK AQDLKTTVLA LQGLQLNTNN CLLNVIRAKY RQDEFKSVAC LSSPKLLETL FQT

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.