CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX69408
CDX70711
CDX70729
CDX76164
CDX77460
CDX78706
CDX78721
CDX83047
CDX85167
CDX87018
CDX89437
CDX90458
CDX92996
CDX94841
CDY03368
CDY04139
CDY05870
CDY06213
CDY07260
CDY09609
CDY13189
CDY16966
CDY17426
CDY18083
CDY25328
CDY25566
CDY34403
CDY36901
CDY44976
CDY46075	nucleus
CDY47165
CDY58069
CDY58070
CDY63966	nucleus
CDY64587
CDY66197
CDY67496
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	CDY07260	AT1G61870.1	20706207
AT1G15570.1	CDY25328	AT1G61870.1	20706207
AT1G15570.1	CDY47165	AT1G61870.1	20706207
AT1G15570.1	CDY25566	AT1G64180.1	21798944
AT1G15570.1	CDY34403	AT1G64180.1	21798944
AT1G15570.1	CDY46075	AT2G23430.1	20018602
AT1G15570.1	CDY63966	AT2G23430.1	20018602
AT1G15570.1	CDX70711	AT3G11270.1	20706207
AT1G15570.1	CDX78706	AT3G11270.1	20706207
AT1G15570.1	CDY04139	AT3G11270.1	20706207
AT1G15570.1	CDY06213	AT3G11270.1	20706207
AT1G15570.1	CDY17426	AT3G11270.1	20706207
AT1G15570.1	CDX77460	AT3G24140.1	21798944
AT1G15570.1	CDX85167	AT3G24140.1	21798944
AT1G15570.1	CDX92996	AT3G24140.1	21798944
AT1G15570.1	CDX94841	AT3G24140.1	21798944
AT1G15570.1	CDY18083	AT3G24140.1	21798944
AT1G15570.1	CDY64587	AT3G24140.1	21798944
AT1G15570.1	CDY36901	AT3G48150.1	21798944
AT1G15570.1	CDY44976	AT3G48150.1	21798944
AT1G15570.1	CDY58069	AT3G48150.1	21798944
AT1G15570.1	CDY58070	AT3G48150.1	21798944
AT1G15570.1	CDY70805	AT3G48150.1	21798944
AT1G15570.1	CDX68497	AT3G48750.1	16415207
AT1G15570.1	CDX83047	AT3G48750.1	16415207
AT1G15570.1	CDX87018	AT3G48750.1	16415207
AT1G15570.1	CDY05870	AT3G48750.1	16415207
AT1G15570.1	CDY66197	AT3G48750.1	16415207
AT1G15570.1	CDY67496	AT3G48750.1	16415207
AT1G15570.1	CDX76164	AT3G54180.1	20706207
AT1G15570.1	CDY13189	AT3G54180.1	20706207
AT1G15570.1	CDX90458	AT4G17680.1	21798944
AT1G15570.1	CDY09609	AT4G17680.1	21798944
AT1G15570.1	CDX89437	AT4G25200.1	21798944
AT1G15570.1	CDY03368	AT4G25200.1	21798944
AT1G15570.1	CDX69408	AT5G16970.1	20706207
AT1G15570.1	CDX70729	AT5G16970.1	20706207
AT1G15570.1	CDX78721	AT5G16970.1	20706207
AT1G15570.1	CDY16966	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36574	Canola	mitochondrion, nucleus	95.39	94.95
CDY53304	Canola	plastid	80.65	85.57
CDX81722	Canola	nucleus, plastid	79.26	85.36
CDX96836	Canola	nucleus, plastid	85.71	84.55
AT1G15570.1	Thale cress	nucleus, plastid	83.64	80.67
CDY48212	Canola	nucleus	61.29	70.56
CDY61993	Canola	nucleus	61.29	70.56
CDX67944	Canola	plastid	68.89	69.21
CDX79389	Canola	plastid	68.89	69.05
CDY38664	Canola	nucleus, plastid	70.28	67.03
CDY37592	Canola	mitochondrion, plastid	70.51	66.96
CDY39984	Canola	plastid	67.05	64.96
CDX87305	Canola	plastid	69.12	64.94
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	35.94	63.16
KRH47513	Soybean	nucleus	58.99	53.78
VIT_09s0002g05240.t01	Wine grape	nucleus	60.14	53.27
KRH44391	Soybean	nucleus	55.07	50.74
CDY06752	Canola	nucleus	32.03	48.77
Solyc03g120440.1.1	Tomato	nucleus, plastid	50.69	48.03
CDX97090	Canola	nucleus	48.16	47.94
PGSC0003DMT400006576	Potato	nucleus	50.92	47.73
CDX87087	Canola	plastid	45.16	47.0
CDX69768	Canola	nucleus, plastid	47.0	46.68
CDY22369	Canola	nucleus	36.41	45.01
Os12t0502300-01	Rice	nucleus, plastid	50.0	44.29
OQU77084	Sorghum	nucleus	49.54	44.06
CDY17037	Canola	nucleus, plastid	36.64	43.68
CDY17091	Canola	nucleus	35.71	43.3
CDY47595	Canola	nucleus, plastid	36.64	42.86
CDY23653	Canola	nucleus	35.02	42.58
CDY66770	Canola	nucleus	35.48	42.54
KXG23504	Sorghum	mitochondrion, nucleus	47.0	42.24
TraesCSU01G054300.1	Wheat	nucleus	48.62	42.12
TraesCS5D01G121100.2	Wheat	plastid	49.08	41.93
TraesCS3D01G529100.1	Wheat	plastid	48.62	41.78
TraesCS5B01G114300.2	Wheat	plastid	48.62	41.62
TraesCS3A01G523600.1	Wheat	plastid	48.62	41.62
CDY06757	Canola	nucleus, plastid	34.79	41.6
CDY47596	Canola	nucleus	34.79	41.6
TraesCS5A01G108500.2	Wheat	plastid	48.62	41.54
GSMUA_Achr3P25340_001	Banana	nucleus	51.84	41.51
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	46.31	41.44
CDY17039	Canola	nucleus	34.56	41.32
HORVU3Hr1G114440.21	Barley	nucleus, plastid	48.16	41.22
CDX88368	Canola	plastid	35.94	41.05
CDY62408	Canola	nucleus, plasma membrane, plastid	19.82	40.76
Zm00001d014756_P006	Maize	nucleus, plastid	48.85	40.69
CDX87520	Canola	nucleus	35.48	39.9
CDX85466	Canola	plastid	38.48	39.57
CDY41784	Canola	plastid	30.88	39.41
CDY02719	Canola	plastid	38.25	38.69
CDX92090	Canola	mitochondrion, nucleus	29.95	36.41
CDY65994	Canola	plastid	36.41	35.67
CDY31481	Canola	nucleus	17.74	35.48
CDY25649	Canola	plastid	35.71	35.47
CDY62475	Canola	nucleus	23.73	29.34
CDY69551	Canola	nucleus	23.96	29.3
CDX72551	Canola	nucleus	26.96	29.18
CDY33634	Canola	nucleus	26.96	28.68
CDY67210	Canola	nucleus	26.73	28.57
CDX96631	Canola	nucleus	26.73	28.29
CDX85942	Canola	nucleus	26.5	28.19
CDY29184	Canola	nucleus	27.19	28.16
CDY30357	Canola	nucleus	26.5	28.12
CDY29520	Canola	nucleus	26.27	27.8
CDY26816	Canola	nucleus	26.04	27.76
CDY07838	Canola	nucleus	26.73	27.75
CDX88261	Canola	nucleus	27.19	27.44
CDX87612	Canola	nucleus	27.19	27.38
CDX68105	Canola	nucleus	23.73	26.08
CDX80988	Canola	plastid	25.35	25.7
CDY11354	Canola	plastid	25.58	25.64
CDX69311	Canola	nucleus	24.42	25.3
CDX75659	Canola	nucleus	24.19	24.53
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	45.85	20.12
CDY33338	Canola	nucleus	24.42	18.15
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.19	17.24
CDY14091	Canola	plastid	25.58	16.92
CDX96819	Canola	nucleus	24.88	16.74
CDX83953	Canola	nucleus	24.42	16.18
CDY04980	Canola	nucleus	26.04	15.74

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078JIX8	UniProt:A0A078JIX8	EnsemblPlants:CDY66415	ProteinID:CDY66415
ProteinID:CDY66415.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00053580001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EE9514	:	:	:	:	:

Description

BnaC05g49810DBnaC05g49810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIX8]

Coordinates

chrLK035253:+:8085..11396

Molecular Weight (calculated)

49051.9 Da

IEP (calculated)

8.513

GRAVY (calculated)

-0.288

Length

434 amino acids

Sequence
(BLAST)

001: MGKENVVSRP LTRAFASALR ASTTENQQRA NTKRPASEDV NVTAPPNKKK KRAVLGDISN ASFSAAKLEA RDIKQVKKSQ GLASASCVTS EVTDLQSGTE
101: AKAEVVSVTA GNTNDTADNC IEKHKLPPRP LGRSSASIVE KSGVIRSSTA LDLPKFTDID SDDKDPLLCC LYAPEIYYNL RVSELKRRPV PNFMERIQKD
201: VTQSMRGILV DWLVEVSEEY TLVPDTLYQT VYLIDWFLHG NYLERQRLQL LGITCMLIAS KYEEINAPRI EEFCFITDNT YTRDQVLEME NQVLAHFSFQ
301: IYTPTPKTFL RRFLRAAQAS YLIPRRELEC LASYLTELTL IDYHFLKFLP SVIAASAVFL AKWTLDQSNH PWNPTLEHYT TYKASDLKAS VHALQDLQLN
401: TKGCPLSAIR MKYKQEKFKS VAVLMSPKLL DTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.