CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG92238	nucleus
KRG97770
KRH01866
KRH04275
KRH06050
KRH11411
KRH11866
KRH20872
KRH20873
KRH23958
KRH24006
KRH25124
KRH26289
KRH27868
KRH27971
KRH28216
KRH29310
KRH30550
KRH31114
KRH36887
KRH39841
KRH42252
KRH47306
KRH48965
KRH51299
KRH57556
KRH58370
KRH66306
KRH66318
KRH66319
KRH66321
KRH66322
KRH71094
KRH75571
KRH77271
KRH77487
KRH77618

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	KRH01866	AT1G57720.1	20706207
AT1G15570.1	KRH06050	AT1G57720.1	20706207
AT1G15570.1	KRH26289	AT1G57720.1	20706207
AT1G15570.1	KRH51299	AT1G57720.1	20706207
AT1G15570.1	KRH11411	AT1G61870.1	20706207
AT1G15570.1	KRH20872	AT1G61870.1	20706207
AT1G15570.1	KRH20873	AT1G61870.1	20706207
AT1G15570.1	KRH27868	AT1G64180.1	21798944
AT1G15570.1	KRH77618	AT1G64180.1	21798944
AT1G15570.1	KRH25124	AT2G27960.1	20706207
AT1G15570.1	KRH30550	AT2G27960.1	20706207
AT1G15570.1	KRG89488	AT3G11270.1	20706207
AT1G15570.1	KRG97770	AT3G11270.1	20706207
AT1G15570.1	KRH31114	AT3G11270.1	20706207
AT1G15570.1	KRH71094	AT3G24140.1	21798944
AT1G15570.1	KRH75571	AT3G24140.1	21798944
AT1G15570.1	KRH24006	AT3G48150.1	21798944
AT1G15570.1	KRH27971	AT3G48150.1	21798944
AT1G15570.1	KRH29310	AT3G48150.1	21798944
AT1G15570.1	KRH77487	AT3G48150.1	21798944
AT1G15570.1	KRH11866	AT3G48750.1	16415207
AT1G15570.1	KRH36887	AT3G48750.1	16415207
AT1G15570.1	KRH42252	AT3G48750.1	16415207
AT1G15570.1	KRH58370	AT3G48750.1	16415207
AT1G15570.1	KRH47306	AT3G54180.1	20706207
AT1G15570.1	KRH04275	AT4G17680.1	21798944
AT1G15570.1	KRH28216	AT4G17680.1	21798944
AT1G15570.1	KRH57556	AT4G17680.1	21798944
AT1G15570.1	KRH77271	AT4G17680.1	21798944
AT1G15570.1	KRH23958	AT4G25200.1	21798944
AT1G15570.1	KRH39841	AT4G25200.1	21798944
AT1G15570.1	KRH48965	AT5G16970.1	20706207
AT1G15570.1	KRH66306	AT5G16970.1	20706207
AT1G15570.1	KRH66318	AT5G16970.1	20706207
AT1G15570.1	KRH66319	AT5G16970.1	20706207
AT1G15570.1	KRH66321	AT5G16970.1	20706207
AT1G15570.1	KRH66322	AT5G16970.1	20706207
AT1G80370.1	KRG92238	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44391	Soybean	nucleus	89.71	90.66
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.45	66.4
Bra000822.1-P	Field mustard	nucleus	48.11	60.74
CDY61993	Canola	nucleus	47.27	59.68
CDY48212	Canola	nucleus	47.27	59.68
CDY66415	Canola	nucleus	53.78	58.99
CDY36574	Canola	mitochondrion, nucleus	53.57	58.49
Bra031463.1-P	Field mustard	nucleus	45.17	58.27
CDX81722	Canola	nucleus, plastid	48.74	57.57
Bra026756.1-P	Field mustard	plastid	49.37	57.46
VIT_09s0002g05240.t01	Wine grape	nucleus	58.82	57.14
CDY53304	Canola	plastid	48.95	56.97
AT1G80370.1	Thale cress	plastid	54.2	55.97
AT1G15570.1	Thale cress	nucleus, plastid	52.73	55.78
CDX96836	Canola	nucleus, plastid	51.26	55.45
Bra026120.1-P	Field mustard	nucleus	53.99	55.15
Bra016654.1-P	Field mustard	nucleus, plastid	51.05	54.61
CDY39984	Canola	plastid	51.26	54.46
CDY38664	Canola	nucleus, plastid	51.68	54.07
Bra008477.1-P	Field mustard	plastid	51.89	54.05
CDX67944	Canola	plastid	48.95	53.94
CDY37592	Canola	mitochondrion, plastid	51.68	53.83
CDX79389	Canola	plastid	48.74	53.58
Bra003563.1-P	Field mustard	plastid	48.53	53.47
PGSC0003DMT400006576	Potato	nucleus	50.84	52.27
KRH52056	Soybean	nucleus	23.11	52.13
CDX87305	Canola	plastid	50.42	51.95
Bra035186.1-P	Field mustard	plastid	50.42	51.95
Solyc03g120440.1.1	Tomato	nucleus, plastid	49.58	51.53
KRH52524	Soybean	nucleus	49.58	50.32
KRH61850	Soybean	nucleus	50.84	49.59
KRH16044	Soybean	nucleus	46.85	48.37
OQU77084	Sorghum	nucleus	49.16	47.95
KRH05060	Soybean	nucleus	45.38	47.06
Os12t0502300-01	Rice	nucleus, plastid	48.11	46.73
TraesCS5B01G114300.2	Wheat	plastid	48.32	45.36
TraesCS5D01G121100.2	Wheat	plastid	48.32	45.28
TraesCS5A01G108500.2	Wheat	plastid	48.32	45.28
KRH15427	Soybean	nucleus, plastid	34.03	44.51
Zm00001d014756_P006	Maize	nucleus, plastid	48.53	44.34
TraesCSU01G054300.1	Wheat	nucleus	46.64	44.31
KRH05614	Soybean	nucleus	34.03	44.14
GSMUA_Achr3P25340_001	Banana	nucleus	50.21	44.1
TraesCS3D01G529100.1	Wheat	plastid	46.64	43.96
KRH61371	Soybean	nucleus	32.14	43.84
TraesCS3A01G523600.1	Wheat	plastid	46.64	43.79
KXG23504	Sorghum	mitochondrion, nucleus	44.33	43.69
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	44.12	43.3
HORVU3Hr1G114440.21	Barley	nucleus, plastid	46.01	43.2
KRH61375	Soybean	nucleus	29.62	43.12
KRH61369	Soybean	nucleus	28.57	41.59
KRH61373	Soybean	nucleus, plastid	31.51	40.0
KRH52055	Soybean	nucleus	30.04	39.94
KRH66720	Soybean	endoplasmic reticulum, vacuole	16.39	39.2
KRH53279	Soybean	plastid	35.71	35.42
KRH64625	Soybean	plastid	35.29	34.71
KRH17986	Soybean	plastid	35.08	33.2
KRH16410	Soybean	plastid	34.24	32.34
KRH60628	Soybean	nucleus	24.16	28.4
KRH51329	Soybean	nucleus, plastid	24.58	28.19
KRH14611	Soybean	nucleus	25.84	28.02
KRH66718	Soybean	plastid	21.85	27.88
KRH66715	Soybean	nucleus	22.69	27.55
KRH73516	Soybean	nucleus	25.42	27.5
KRH76553	Soybean	nucleus	24.37	26.85
KRH66713	Soybean	nucleus	25.42	26.65
KRG95055	Soybean	nucleus	25.42	26.59
KRH28901	Soybean	nucleus	23.32	25.64
KRG95056	Soybean	cytosol	20.17	24.81
KRH44849	Soybean	nucleus	24.58	15.79

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100789757	MapMan:13.1.1.1.1	EMBL:ACUP02004154	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_07G034100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:K7KZF4	ProteinID:KRH47512.1	EnsemblPlants:KRH47513	ProteinID:KRH47513	ProteinID:KRH47513.1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF346	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001CAB52A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:2677660..2683555

Molecular Weight (calculated)

54013.7 Da

IEP (calculated)

7.492

GRAVY (calculated)

-0.347

Length

476 amino acids

Sequence
(BLAST)

001: MKKENSVMLK AGELPGRLTR ARAAAALRAY GQLPPLKERA QQNQNQLSRV NSKRAVSDNT CVQRKRKAVL QEVTNVCCEN AYKACLNSTN IQARKSKLAK
101: AGQINVSKVA PSVTVEPRQF QVDSKAKETA LQSEDTMCSI NLENNELLQL NANDCSKDFR LPESQMSGIS AHPLISQKKD TKDNLPKLLT ALKDSDITNI
201: DDDDLEDPQS CSLYAADIYD TIRVAELARR PYPNFMETVQ RDITQSMRGI LVDWLVEVSE EYKLVTDTLY LTVYLIDWFL SKNYIERQRL QLLGITCMLI
301: ASKYEEINAP RIEDFCFITD NTYTKAEVLK MESQVLKSSE YQLYTPTIQT FLRRFLRAAQ ASYKDQSLEL ECLANYLAEL TLMDYGFLNF LPSIIAASAV
401: FLARWTLDQS NHPWNPTLQH YACYKASDLK TTVLALQDLQ LNTDGCSLTA VRTKYRQDNF KCVAALSSPK LLETLF

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.