CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94254
KRG94519
KRH06950
KRH20017
KRH41052
KRH54085
KRH57679
KRH63871

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	KRH20017	AT5G07300.1	20706207
AT1G44110.1	KRH41052	AT5G07300.1	20706207
AT1G44110.1	KRH54085	AT5G07300.1	20706207
AT1G44110.1	KRH63871	AT5G07300.1	20706207
AT1G44110.1	KRG94254	AT5G14170.1	20706207
AT1G44110.1	KRG94519	AT5G14170.1	20706207
AT1G44110.1	KRH06950	AT5G14170.1	20706207
AT1G44110.1	KRH57679	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64625	Soybean	plastid	95.21	94.42
Os05t0237100-01	Rice	extracellular	28.12	68.53
VIT_18s0001g02060.t01	Wine grape	plastid	70.42	68.28
KRH17986	Soybean	plastid	70.62	67.4
KRH16410	Soybean	plastid	69.17	65.87
PGSC0003DMT400015424	Potato	plastid	64.17	65.25
Solyc11g005090.1.1	Tomato	plastid	66.46	65.1
AT1G44110.1	Thale cress	plastid	61.04	63.7
Bra032202.1-P	Field mustard	plastid	54.38	61.85
CDY25649	Canola	plastid	55.83	61.33
CDX85466	Canola	plastid	53.75	61.14
Bra023606.1-P	Field mustard	plastid	53.33	61.1
CDY65994	Canola	plastid	56.04	60.72
CDY02719	Canola	plastid	54.17	60.61
Zm00001d032128_P001	Maize	cytosol	19.38	58.86
Os12t0298950-00	Rice	nucleus	54.17	58.17
TraesCS1B01G151800.3	Wheat	nucleus	42.71	57.75
TraesCS3D01G164600.1	Wheat	plastid	60.0	56.47
TraesCS3B01G183400.1	Wheat	plastid	59.79	56.27
TraesCS3A01G157000.1	Wheat	plastid	60.0	56.14
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	58.12	55.58
Os01t0233500-01	Rice	nucleus, plastid	58.54	55.31
Os01t0233100-00	Rice	nucleus, plastid	56.46	55.19
CDX88368	Canola	plastid	43.33	54.74
CDX87520	Canola	nucleus	43.96	54.66
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	56.88	54.6
Bra015671.1-P	Field mustard	plastid	43.54	54.15
KRH52056	Soybean	nucleus	23.75	54.03
Zm00001d040381_P001	Maize	plastid	59.38	53.47
CDY62408	Canola	nucleus, plasma membrane, plastid	23.33	53.08
CDY41784	Canola	plastid	37.29	52.65
AT1G77390.1	Thale cress	plastid	46.25	50.23
KXG21616	Sorghum	nucleus, plastid	48.96	49.06
TraesCS1D01G134100.2	Wheat	nucleus, plastid	48.75	49.06
CDX92090	Canola	mitochondrion, nucleus	36.46	49.02
Zm00001d009011_P001	Maize	nucleus, plastid	51.67	48.63
Bra022173.1-P	Field mustard	nucleus, plastid	38.12	48.54
KRH05614	Soybean	nucleus	36.04	47.14
KRH61375	Soybean	nucleus	31.67	46.48
KRH15427	Soybean	nucleus, plastid	35.21	46.43
Zm00001d021353_P002	Maize	mitochondrion, nucleus	19.17	46.0
KRH61371	Soybean	nucleus	31.46	43.27
KRH61369	Soybean	nucleus	29.38	43.12
KRH52055	Soybean	nucleus	31.88	42.74
TraesCS1A01G138300.1	Wheat	nucleus, plastid	46.46	42.48
KRH61373	Soybean	nucleus, plastid	32.29	41.33
Zm00001d010404_P001	Maize	nucleus	39.38	38.97
KRH61850	Soybean	nucleus	38.75	38.11
KRH52524	Soybean	nucleus	36.25	37.1
KRH16044	Soybean	nucleus	35.42	36.88
KRH66720	Soybean	endoplasmic reticulum, vacuole	15.21	36.68
KRH05060	Soybean	nucleus	35.0	36.6
KRH47513	Soybean	nucleus	35.42	35.71
KRH44391	Soybean	nucleus	34.17	34.82
KRH51329	Soybean	nucleus, plastid	25.62	29.64
KRH60628	Soybean	nucleus	25.0	29.63
KRH66715	Soybean	nucleus	23.12	28.32
KRH14611	Soybean	nucleus	25.83	28.25
KRH73516	Soybean	nucleus	25.42	27.73
KRH66718	Soybean	plastid	21.46	27.61
KRG95055	Soybean	nucleus	25.62	27.03
KRH76553	Soybean	nucleus	23.96	26.62
KRH28901	Soybean	nucleus	23.75	26.33
KRH66713	Soybean	nucleus	24.79	26.21
KRG95056	Soybean	cytosol	20.62	25.58
KRH44849	Soybean	nucleus	23.33	15.11

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100789565	MapMan:13.1.1.1.1	EMBL:ACUP02003457	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_06G116100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0016020	GO:GO:0016021	UniProt:K7KUJ6	EnsemblPlants:KRH53279	ProteinID:KRH53279
ProteinID:KRH53279.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI0001CABE00
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9446036..9449371

Molecular Weight (calculated)

53567.1 Da

IEP (calculated)

7.885

GRAVY (calculated)

-0.221

Length

480 amino acids

Sequence
(BLAST)

001: MSTQNRRSSF SSSTTSSLAK RHVSASTTSS SLAAPANMAK KRPPLSNLTN TVAHRNSSSL VPCAAKFAKT KKEVVPACSG NKRPTLANVK PTSAAIFPKA
101: NSFPVRDEAP PPVATVTVPA PVVDVSPSKS DAMSVSMDES MSSCDSFKSP DIEYVDNIDV AAVDSIERKT FSNLNISDST EGNICSRDIL VELEKGENFV
201: NVDNNYADPQ LCATFACDIY KHLRASEAKK RPSTDFMERI QKEINPSMRA ILIDWLVEVA EEYRLVPDTL YLTVNYIDRY LSGNVMNRQR LQLLGVASMM
301: IASKYEEICA PQVEEFCYIT DNTYFKEEVL QMESAVLNFL KFEMTAPTVK CFLRRFVRAA QGVDEVPSLQ LECLTNYIAE LSLMEYSMLG YAPSLIAASA
401: IFLAKFILFP SKKPWTSTLQ HYTLYKPSDL CVCVRDLHRL CCNSPNSNLP AIREKYSQHK YKYVAKKYCP PSIPPEFFQN

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.