Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g068100.2.1 | |
| Solyc03g118200.2.1 | |
| Solyc06g068840.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44110.1 | Solyc03g118200.2.1 | AT5G07300.1 | 20706207 |
| AT1G44110.1 | Solyc06g068840.2.1 | AT5G07300.1 | 20706207 |
| AT1G44110.1 | Solyc02g068100.2.1 | AT5G14170.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015424 | Potato | plastid | 90.61 | 94.07 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 52.65 | 69.73 |
| Os05t0237100-01 | Rice | extracellular | 27.35 | 68.02 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 67.35 | 66.67 |
| KRH53279 | Soybean | plastid | 65.1 | 66.46 |
| KRH64625 | Soybean | plastid | 65.1 | 65.91 |
| AT1G44110.1 | Thale cress | plastid | 55.51 | 59.13 |
| Bra032202.1-P | Field mustard | plastid | 50.82 | 59.0 |
| Bra023606.1-P | Field mustard | plastid | 49.8 | 58.23 |
| CDX85466 | Canola | plastid | 49.39 | 57.35 |
| CDY02719 | Canola | plastid | 50.2 | 57.34 |
| CDY65994 | Canola | plastid | 51.84 | 57.34 |
| KRH17986 | Soybean | plastid | 58.78 | 57.26 |
| CDY25649 | Canola | plastid | 50.82 | 56.98 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 41.02 | 56.62 |
| Os12t0298950-00 | Rice | nucleus | 51.43 | 56.38 |
| KRH16410 | Soybean | plastid | 57.55 | 55.95 |
| CDX88368 | Canola | plastid | 43.27 | 55.79 |
| Zm00001d032128_P001 | Maize | cytosol | 17.96 | 55.7 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 56.33 | 55.2 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 56.33 | 54.98 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 23.67 | 54.98 |
| CDX87520 | Canola | nucleus | 43.06 | 54.66 |
| Os01t0233100-00 | Rice | nucleus, plastid | 54.69 | 54.58 |
| Bra015671.1-P | Field mustard | plastid | 42.86 | 54.4 |
| Os01t0233500-01 | Rice | nucleus, plastid | 55.71 | 53.74 |
| CDY41784 | Canola | plastid | 37.14 | 53.53 |
| TraesCS3D01G164600.1 | Wheat | plastid | 54.69 | 52.55 |
| TraesCS3A01G157000.1 | Wheat | plastid | 54.9 | 52.44 |
| TraesCS3B01G183400.1 | Wheat | plastid | 54.49 | 52.35 |
| Zm00001d040381_P001 | Maize | plastid | 56.12 | 51.59 |
| AT1G77390.1 | Thale cress | plastid | 44.69 | 49.55 |
| CDX92090 | Canola | mitochondrion, nucleus | 35.51 | 48.74 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 46.33 | 47.59 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 36.33 | 47.21 |
| KXG21616 | Sorghum | nucleus, plastid | 46.12 | 47.18 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 48.78 | 46.86 |
| Solyc12g088530.1.1 | Tomato | nucleus | 32.45 | 44.92 |
| Solyc12g088520.1.1 | Tomato | nucleus | 32.04 | 44.23 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 17.96 | 44.0 |
| Solyc04g078310.2.1 | Tomato | nucleus | 33.27 | 43.94 |
| Solyc12g088500.1.1 | Tomato | nucleus | 31.22 | 43.22 |
| Solyc12g088470.1.1 | Tomato | nucleus | 31.43 | 42.78 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 44.08 | 41.14 |
| Solyc10g049360.1.1 | Tomato | nucleus | 31.02 | 40.21 |
| Solyc06g065680.2.1 | Tomato | nucleus, plastid | 37.14 | 38.32 |
| Zm00001d010404_P001 | Maize | nucleus | 36.73 | 37.11 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 33.27 | 35.59 |
| Solyc10g078330.1.1 | Tomato | nucleus | 25.71 | 29.79 |
| Solyc12g094600.1.1 | Tomato | nucleus | 25.71 | 29.65 |
| Solyc02g061650.1.1 | Tomato | nucleus | 21.22 | 29.63 |
| Solyc04g082430.2.1 | Tomato | nucleus | 23.27 | 29.01 |
| Solyc02g082820.2.1 | Tomato | nucleus | 24.9 | 28.11 |
| Solyc06g073610.2.1 | Tomato | nucleus | 25.1 | 27.95 |
| Solyc01g009040.2.1 | Tomato | nucleus | 24.49 | 27.59 |
| Solyc10g080950.1.1 | Tomato | nucleus | 25.71 | 27.27 |
| Solyc03g032190.2.1 | Tomato | nucleus | 23.67 | 26.91 |
| Solyc07g066660.2.1 | Tomato | nucleus | 23.27 | 15.43 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | EMBL:AJ243451 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 | UniProt:Q9XGI5 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc11g005090.1 | EnsemblPlants:Solyc11g005090.1.1 | UniParc:UPI000009ECB5 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin A1 [Source:UniProtKB/TrEMBL;Acc:Q9XGI5]
Coordinates
chr11:-:69680..73275
Molecular Weight (calculated)
54342.3 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.162
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTTQNRRSS AVAKRQAMAA NSSGLEHNQT GKLNAKKRPA LSNISNNTTV SARNSVSHSS KLAPCTSKIV NIKKNTSACN SNAVSSGTAV LPASSSVRPS
101: SKPVSIQRSD AVVPKITVIP VPATCSMDIS PSHSDGSLVS MDESMSNSDT VRSPEVEYID DHELAAVDSI EKKACSTLYI SEHVKAAAAD ICKRDVLVDL
201: ESGDKIMNID NNLVDPQLCA TMACDIYKHL RASEAKKRPS TDFMAKVQKD INPSMRAILI DWLVEVAEEY RLVPDTLHLT INYIDRYLSG NLMDRQRLQL
301: LGVACMMIAS KYEEICAPQV EEFCYITDNT YFKEEVLQME SAVLNYLKFE MTAPTAKCFL RRFVRAAQGL NEVLSLQLEH LASYIAELSL LEYNMLCYAP
401: SLIAASAIFL AKYILLPSVK PWNSTLRHYT LYQPSDLRDC VLALHSLCCN NNNSSLPAVR EKYSQHKYKF VAKKYCPPTV PVEFFQNISS
101: SKPVSIQRSD AVVPKITVIP VPATCSMDIS PSHSDGSLVS MDESMSNSDT VRSPEVEYID DHELAAVDSI EKKACSTLYI SEHVKAAAAD ICKRDVLVDL
201: ESGDKIMNID NNLVDPQLCA TMACDIYKHL RASEAKKRPS TDFMAKVQKD INPSMRAILI DWLVEVAEEY RLVPDTLHLT INYIDRYLSG NLMDRQRLQL
301: LGVACMMIAS KYEEICAPQV EEFCYITDNT YFKEEVLQME SAVLNYLKFE MTAPTAKCFL RRFVRAAQGL NEVLSLQLEH LASYIAELSL LEYNMLCYAP
401: SLIAASAIFL AKYILLPSVK PWNSTLRHYT LYQPSDLRDC VLALHSLCCN NNNSSLPAVR EKYSQHKYKF VAKKYCPPTV PVEFFQNISS
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.