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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g112000.2.1
Solyc02g063070.2.1
Solyc03g034180.2.1
Solyc04g081190.2.1
Solyc04g082840.2.1
Solyc05g053780.2.1
Solyc07g009140.2.1
Solyc09g092320.2.1
Solyc10g078320.1.1
Solyc11g040340.1.1
Solyc11g066160.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G17620.1 Solyc04g082840.2.1 AT1G76540.1 12857813
AT4G35620.1 Solyc11g040340.1.1 AT1G71380.1 20706207
AT4G35620.1 Solyc11g066160.1.1 AT2G28740.1 20706207
AT4G35620.1 Solyc01g112000.2.1 AT3G45970.1 20706207
AT4G35620.1 Solyc10g078320.1.1 AT3G56690.1 20706207
AT4G35620.1 Solyc05g053780.2.1 AT4G13850.1 20706207
AT4G35620.1 Solyc09g092320.2.1 AT4G13850.1 20706207
AT4G35620.1 Solyc07g009140.2.1 AT4G24820.1 20706207
AT4G35620.1 Solyc04g081190.2.1 AT4G38900.1 20706207
AT4G35620.1 Solyc02g063070.2.1 AT5G38480.1 20706207
AT4G35620.1 Solyc03g034180.2.1 AT5G38480.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400093973 Potato nucleus 73.22 77.88
Solyc03g032190.2.1 Tomato nucleus 62.68 51.04
Solyc02g082820.2.1 Tomato nucleus 62.39 50.46
GSMUA_Achr5P19270_001 Banana cytosol 30.77 49.77
CDX72551 Canola nucleus 54.99 48.13
CDY67210 Canola nucleus 54.99 47.54
Bra017726.1-P Field mustard nucleus 54.7 47.29
CDY26816 Canola nucleus 54.13 46.68
CDY07838 Canola nucleus 55.56 46.65
CDY30357 Canola nucleus 54.13 46.45
Bra024504.1-P Field mustard nucleus 55.27 46.3
CDY29184 Canola nucleus 55.27 46.3
Bra037265.1-P Field mustard nucleus 53.85 46.21
AT4G35620.1 Thale cress nucleus 56.41 46.15
AT2G17620.1 Thale cress nucleus 56.13 45.92
Solyc04g082430.2.1 Tomato nucleus 50.14 44.78
GSMUA_Achr8P13320_001 Banana nucleus 51.85 43.33
GSMUA_Achr11P... Banana nucleus 50.14 43.14
Os06t0726800-01 Rice nucleus 51.28 42.96
Zm00001d036360_P002 Maize nucleus 51.85 42.92
KXG20945 Sorghum nucleus 51.28 42.45
TraesCS2B01G422800.1 Wheat nucleus 49.29 42.3
TraesCS2A01G404800.1 Wheat nucleus 48.72 42.22
Solyc12g094600.1.1 Tomato nucleus 50.71 41.88
GSMUA_Achr5P19110_001 Banana nucleus 50.43 41.75
Os04t0563700-01 Rice mitochondrion 49.86 41.67
TraesCS7B01G472800.1 Wheat nucleus 49.57 41.53
TraesCS2D01G401700.1 Wheat nucleus, plastid 49.57 41.33
Zm00001d026129_P001 Maize nucleus 49.86 41.08
TraesCS7D01G536000.1 Wheat nucleus 49.0 41.05
TraesCS7A01G549500.1 Wheat nucleus 48.72 40.81
HORVU7Hr1G121820.6 Barley nucleus 48.43 40.48
EES12664 Sorghum nucleus 49.57 40.28
Zm00001d002662_P010 Maize nucleus 50.14 38.68
HORVU0Hr1G022770.1 Barley nucleus, plastid 30.2 38.13
HORVU2Hr1G096070.2 Barley nucleus 47.58 35.46
Solyc10g078330.1.1 Tomato nucleus 35.04 29.08
Solyc12g088530.1.1 Tomato nucleus 28.77 28.53
Solyc12g088470.1.1 Tomato nucleus 29.06 28.33
Solyc01g009040.2.1 Tomato nucleus 35.04 28.28
Solyc12g088500.1.1 Tomato nucleus 28.49 28.25
Solyc10g080950.1.1 Tomato nucleus 37.04 28.14
Solyc04g078310.2.1 Tomato nucleus 29.63 28.03
Solyc12g088520.1.1 Tomato nucleus 28.21 27.89
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 51.0 26.8
Solyc06g073610.2.1 Tomato nucleus 33.33 26.59
Solyc10g049360.1.1 Tomato nucleus 26.5 24.6
Solyc06g065680.2.1 Tomato nucleus, plastid 30.77 22.74
Solyc03g120440.1.1 Tomato nucleus, plastid 29.63 22.71
Solyc11g005090.1.1 Tomato plastid 29.63 21.22
Solyc07g066660.2.1 Tomato nucleus 36.18 17.19
Protein Annotations
EnsemblPlants:Solyc02g061650.1.1EnsemblPlantsGene:Solyc02g061650.1Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF261PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292SMART:SM00385
SMART:SM01332SUPFAM:SSF47954UniParc:UPI0002767CDAUniProt:K4B655MapMan:13.1.1.1.2:
Description
No Description!
Coordinates
chr2:+:33159928..33162701
Molecular Weight (calculated)
40532.1 Da
IEP (calculated)
5.316
GRAVY (calculated)
-0.182
Length
351 amino acids
Sequence
(BLAST)
001: MDQNKFTNVQ GGNAQIVKIG GERTQNRRAL SVINQNLVGA HRYPCVVNKR ELSEKFGATQ IGTLRQHYLE MEDVFEEALI DIDNDDAKNP LAGVEYVGDL
101: YAYYRKMEVY SCVLTNYMEQ QSEINGNMRG VLIDWIIEVH DKFELKEETL FLTVNLLDRF LEKQVVAKNK LQLVGLVAFL IAGKYEEILP PLVQELVIIS
201: YENYNKKDVI EMEKLMLNTL QNNMSFPTAY VFMRRFLKAT QADKKLEELS FFLIELCLVE YEMLMNSSSF MAAAEIYTAQ CTLYGVKEWS TTCEWHIGYS
301: QESLMKCTKL IVMYHDKAKT GGLIRVHNKY NASKFGYVAK VEPTYFLVQD S
Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.