Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G404800.1 | Wheat | nucleus | 77.28 | 89.88 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 77.07 | 88.75 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 78.56 | 87.89 |
| Os04t0563700-01 | Rice | mitochondrion | 63.91 | 71.67 |
| Zm00001d026129_P001 | Maize | nucleus | 61.36 | 67.84 |
| EES12664 | Sorghum | nucleus | 62.21 | 67.82 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 30.79 | 66.82 |
| PGSC0003DMT400075380 | Potato | nucleus | 33.55 | 66.67 |
| Zm00001d002662_P010 | Maize | nucleus | 62.42 | 64.62 |
| CDY31481 | Canola | nucleus | 27.81 | 60.37 |
| GSMUA_Achr11P... | Banana | nucleus | 47.98 | 55.39 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 49.26 | 54.72 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 32.27 | 54.68 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 48.41 | 54.29 |
| Solyc04g082430.2.1 | Tomato | nucleus | 45.01 | 53.94 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 47.77 | 53.57 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 49.04 | 52.38 |
| VIT_03s0038g02800.t01 | Wine grape | nucleus, plastid | 46.07 | 51.18 |
| KRH28901 | Soybean | nucleus | 46.92 | 51.04 |
| CDX85942 | Canola | nucleus | 44.16 | 50.98 |
| KRH76553 | Soybean | nucleus | 46.71 | 50.93 |
| Bra003727.1-P | Field mustard | nucleus | 40.76 | 50.13 |
| PGSC0003DMT400025854 | Potato | nucleus | 46.92 | 50.11 |
| CDX96631 | Canola | nucleus | 43.52 | 50.0 |
| PGSC0003DMT400093973 | Potato | nucleus | 35.03 | 50.0 |
| Bra016460.1-P | Field mustard | nucleus | 43.31 | 49.76 |
| CDY33634 | Canola | nucleus | 43.1 | 49.75 |
| Solyc12g094600.1.1 | Tomato | nucleus | 44.59 | 49.41 |
| KRH60628 | Soybean | nucleus | 42.46 | 49.38 |
| PGSC0003DMT400003868 | Potato | nucleus | 45.22 | 49.19 |
| PGSC0003DMT400048062 | Potato | nucleus | 45.01 | 49.19 |
| Solyc03g032190.2.1 | Tomato | nucleus | 45.01 | 49.19 |
| Bra015762.1-P | Field mustard | nucleus | 44.8 | 48.96 |
| CDX87612 | Canola | nucleus | 44.59 | 48.72 |
| KRH51329 | Soybean | nucleus, plastid | 42.89 | 48.67 |
| CDX88261 | Canola | nucleus | 44.37 | 48.6 |
| CDX68105 | Canola | nucleus | 40.55 | 48.35 |
| AT1G20610.1 | Thale cress | nucleus | 43.95 | 48.25 |
| Bra024504.1-P | Field mustard | nucleus | 42.68 | 47.97 |
| CDY29184 | Canola | nucleus | 42.68 | 47.97 |
| Solyc02g082820.2.1 | Tomato | nucleus | 44.16 | 47.93 |
| CDX72551 | Canola | nucleus | 40.76 | 47.88 |
| Bra017726.1-P | Field mustard | nucleus | 41.19 | 47.78 |
| CDY67210 | Canola | nucleus | 41.19 | 47.78 |
| AT1G76310.3 | Thale cress | nucleus | 46.5 | 47.71 |
| CDY07838 | Canola | nucleus | 42.25 | 47.61 |
| Solyc02g061650.1.1 | Tomato | nucleus | 35.46 | 47.58 |
| CDY26816 | Canola | nucleus | 40.98 | 47.42 |
| Bra025831.1-P | Field mustard | nucleus | 41.19 | 47.32 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 26.54 | 47.17 |
| AT4G35620.1 | Thale cress | nucleus | 42.68 | 46.85 |
| AT2G17620.1 | Thale cress | nucleus | 42.46 | 46.62 |
| CDY30357 | Canola | nucleus | 40.34 | 46.45 |
| CDY29520 | Canola | nucleus | 40.34 | 46.34 |
| Bra037265.1-P | Field mustard | nucleus | 40.13 | 46.21 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 27.39 | 40.31 |
| HORVU1Hr1G068080.1 | Barley | plastid | 28.24 | 38.89 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 49.26 | 34.73 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 30.79 | 34.52 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 32.27 | 33.55 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 30.79 | 33.1 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 30.57 | 32.51 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 30.57 | 32.51 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 31.85 | 30.49 |
| HORVU4Hr1G013320.1 | Barley | nucleus | 22.72 | 28.69 |
| HORVU3Hr1G114440.21 | Barley | nucleus, plastid | 24.84 | 23.08 |
| HORVU5Hr1G018820.2 | Barley | nucleus, plastid | 21.66 | 22.47 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 19.75 | 22.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | UniProt:A0A287J1G4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:HORVU2Hr1G096070 |
| EnsemblPlants:HORVU2Hr1G096070.2 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B47E2F5 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:-:672895155..672899007
Molecular Weight (calculated)
49941.0 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.361
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP SAWACCRVRS PGSHKKEAAA RRPRSPWCPA ATAMERAGEN RRPAAGKPVP GVRGMGNRRP LKELNSLAGA
101: HPYPYAIANK PRLEKTGRNE KKPALVSHRP LTRHRAALLE NKQLPDHLAV AVDAAEPEVD PQNEPIPDDT AETDEEIELV GGDTDMDEEE QEDIVDDVSL
201: MDIDSADSGN PLAATEYVEE IYRFYRKNEK LSCVRPDYMS SQGDINEKMR AILVDWLIEV HYKFELMDET LFLTVNIIDR YLEKQVVPRK KLQLVGVTAM
301: LLACKYEEVS VPVVEDLVLI SDRAYNKGEI LEMEKSVLNT LEYNMSVPTP YVFMRRFLKA ADSDKQLQLV SFFMLELCLV EYKMLKYCPS LLAAAAVYTA
401: QCAINRCWQW TKICETHSRY TRDQLIECSS MMVQFHQKAA GGKLTGVHRK YSTLRFGSVA KVEPAHFLLG G
101: HPYPYAIANK PRLEKTGRNE KKPALVSHRP LTRHRAALLE NKQLPDHLAV AVDAAEPEVD PQNEPIPDDT AETDEEIELV GGDTDMDEEE QEDIVDDVSL
201: MDIDSADSGN PLAATEYVEE IYRFYRKNEK LSCVRPDYMS SQGDINEKMR AILVDWLIEV HYKFELMDET LFLTVNIIDR YLEKQVVPRK KLQLVGVTAM
301: LLACKYEEVS VPVVEDLVLI SDRAYNKGEI LEMEKSVLNT LEYNMSVPTP YVFMRRFLKA ADSDKQLQLV SFFMLELCLV EYKMLKYCPS LLAAAAVYTA
401: QCAINRCWQW TKICETHSRY TRDQLIECSS MMVQFHQKAA GGKLTGVHRK YSTLRFGSVA KVEPAHFLLG G
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.