Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007023.1-P | Field mustard | nucleus | 53.37 | 100.0 |
| TraesCS6B01G081900.1 | Wheat | nucleus | 53.37 | 100.0 |
| TraesCS5D01G224700.1 | Wheat | nucleus | 53.37 | 100.0 |
| TraesCS5B01G356200.1 | Wheat | nucleus | 53.37 | 100.0 |
| TraesCS5A01G299500.1 | Wheat | nucleus | 53.37 | 100.0 |
| TraesCS4B01G225000.1 | Wheat | nucleus | 53.37 | 100.0 |
| TraesCS1A01G291700.1 | Wheat | nucleus | 53.37 | 100.0 |
| Solyc11g066160.1.1 | Tomato | nucleus | 53.37 | 100.0 |
| HORVU6Hr1G066400.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU6Hr1G011710.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU2Hr1G098320.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU1Hr1G073680.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU1Hr1G022390.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU1Hr1G020040.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU1Hr1G066960.1 | Barley | nucleus | 53.37 | 100.0 |
| HORVU1Hr1G020060.1 | Barley | nucleus | 53.37 | 100.0 |
| AT1G07820.1 | Thale cress | nucleus | 53.37 | 100.0 |
| GSMUA_Achr7P15380_001 | Banana | nucleus | 53.37 | 100.0 |
| CDX95121 | Canola | nucleus | 53.37 | 100.0 |
| EES18362 | Sorghum | nucleus | 53.37 | 100.0 |
| HORVU7Hr1G114740.1 | Barley | nucleus | 48.7 | 90.38 |
| HORVU7Hr1G114720.1 | Barley | nucleus | 48.19 | 90.29 |
| HORVU3Hr1G087170.1 | Barley | nucleus, plasma membrane | 54.92 | 88.33 |
| HORVU2Hr1G093680.3 | Barley | nucleus | 54.92 | 85.48 |
| HORVU6Hr1G011540.1 | Barley | nucleus, plastid | 53.89 | 83.2 |
| HORVU1Hr1G071760.1 | Barley | nucleus, plastid | 53.89 | 83.2 |
| HORVU3Hr1G088160.1 | Barley | nucleus | 54.92 | 82.81 |
| HORVU6Hr1G011780.1 | Barley | nucleus | 53.37 | 81.75 |
| HORVU1Hr1G070700.1 | Barley | nucleus, plastid | 54.4 | 81.4 |
| HORVU1Hr1G017830.1 | Barley | nucleus | 53.37 | 81.1 |
| HORVU1Hr1G029090.2 | Barley | nucleus | 55.44 | 81.06 |
| HORVU2Hr1G098340.4 | Barley | nucleus | 53.89 | 80.62 |
| HORVU2Hr1G040050.1 | Barley | nucleus | 43.01 | 80.58 |
| HORVU1Hr1G079440.1 | Barley | nucleus, plastid | 53.89 | 79.39 |
| HORVU5Hr1G086630.1 | Barley | nucleus | 52.85 | 79.07 |
| HORVU7Hr1G100410.1 | Barley | nucleus | 52.33 | 78.91 |
| HORVU1Hr1G071210.4 | Barley | nucleus | 53.89 | 78.2 |
| HORVU5Hr1G079130.1 | Barley | nucleus | 52.85 | 76.69 |
| HORVU6Hr1G029210.3 | Barley | nucleus, plastid | 53.89 | 76.47 |
| HORVU4Hr1G063260.2 | Barley | nucleus | 54.92 | 76.26 |
| HORVU7Hr1G043300.1 | Barley | nucleus | 53.37 | 74.64 |
| HORVU3Hr1G023460.1 | Barley | nucleus | 53.89 | 74.29 |
| HORVU6Hr1G011510.1 | Barley | nucleus, plastid | 53.37 | 73.05 |
| HORVU1Hr1G071190.2 | Barley | nucleus, plastid | 53.37 | 70.55 |
| HORVU6Hr1G013530.1 | Barley | nucleus, plastid | 54.4 | 70.0 |
| HORVU5Hr1G087870.1 | Barley | nucleus, plastid | 53.89 | 69.33 |
| HORVU1Hr1G052030.2 | Barley | nucleus, plastid | 53.37 | 68.21 |
| HORVU2Hr1G097990.1 | Barley | nucleus, plastid | 53.37 | 67.76 |
| HORVU5Hr1G087830.1 | Barley | nucleus | 54.92 | 62.72 |
| HORVU4Hr1G023200.1 | Barley | nucleus | 52.85 | 62.2 |
| HORVU2Hr1G106590.1 | Barley | nucleus, plastid | 43.52 | 59.15 |
| HORVU2Hr1G099490.1 | Barley | nucleus, plastid | 54.4 | 58.66 |
| HORVU6Hr1G011030.1 | Barley | nucleus | 34.2 | 55.93 |
| HORVU5Hr1G086620.4 | Barley | nucleus | 52.85 | 55.74 |
| HORVU6Hr1G011020.1 | Barley | nucleus, plastid | 51.3 | 50.51 |
| HORVU1Hr1G080200.2 | Barley | plastid | 35.23 | 37.99 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.5 | UniProt:A0A287GNX2 | InterPro:CENP-T/H4_C | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0046982 | EnsemblPlantsGene:HORVU1Hr1G090300 | EnsemblPlants:HORVU1Hr1G090300.44 | InterPro:Histone-fold | InterPro:Histone_H4 |
| InterPro:Histone_H4_CS | InterPro:IPR009072 | PFAM:PF15511 | PRINTS:PR00623 | ScanProsite:PS00047 | PANTHER:PTHR10484 |
| PANTHER:PTHR10484:SF160 | SMART:SM00417 | SUPFAM:SSF47113 | UniParc:UPI000B47565F | SEG:seg | : |
Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A287GNX2]
Coordinates
chrchr1H:+:545691145..545694247
Molecular Weight (calculated)
21171.7 Da
IEP (calculated)
11.446
GRAVY (calculated)
-0.590
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: LIPPPTTSQT HRSKGTAAEM SGRGKGGKGL GKGGAKRHRK VLRDNIQGIT KPAIRRLARR GGVKRISGLI YEETRGVLKI FLENVIRDAV TYTEHARRKT
101: VTAMDVVYAL KRQGRTLYGF GGNHRRHGVG ESLLGGRRCD GGCSLQWMEQ SEKLATDLLK MAAENLGRLK RSCSSKCRSS SLARETGGAF FFD
101: VTAMDVVYAL KRQGRTLYGF GGNHRRHGVG ESLLGGRRCD GGCSLQWMEQ SEKLATDLLK MAAENLGRLK RSCSSKCRSS SLARETGGAF FFD
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
101: FGG
Arabidopsis Description
Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.