Factsheet for Solyc11g066160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G28740.1	Thale cress	nucleus	100.0	100.0
Bra000481.1-P	Field mustard	nucleus	100.0	100.0
Bra006699.1-P	Field mustard	nucleus	100.0	100.0
Bra007023.1-P	Field mustard	nucleus	100.0	100.0
Bra017178.1-P	Field mustard	nucleus	100.0	100.0
Bra018691.1-P	Field mustard	nucleus	100.0	100.0
Bra031594.1-P	Field mustard	nucleus	100.0	100.0
Bra035673.1-P	Field mustard	nucleus	100.0	100.0
CDY04583	Canola	nucleus	100.0	100.0
EER95622	Sorghum	nucleus	100.0	100.0
EES00250	Sorghum	nucleus	100.0	100.0
EES00251	Sorghum	nucleus	100.0	100.0
EES01716	Sorghum	nucleus	100.0	100.0
EES18362	Sorghum	nucleus	100.0	100.0
GSMUA_Achr10P...	Banana	nucleus	100.0	100.0
GSMUA_Achr11P...	Banana	nucleus	100.0	100.0
GSMUA_Achr1P15010_001	Banana	nucleus	100.0	100.0
GSMUA_Achr3P05060_001	Banana	nucleus	100.0	100.0
GSMUA_Achr3P27970_001	Banana	nucleus	100.0	100.0
GSMUA_Achr7P15380_001	Banana	nucleus	100.0	100.0
GSMUA_Achr8P20970_001	Banana	nucleus	100.0	100.0
GSMUA_Achr9P04120_001	Banana	nucleus	100.0	100.0
HORVU1Hr1G020040.1	Barley	nucleus	100.0	100.0
HORVU1Hr1G020060.1	Barley	nucleus	100.0	100.0
HORVU1Hr1G022390.1	Barley	nucleus	100.0	100.0
HORVU1Hr1G066960.1	Barley	nucleus	100.0	100.0
HORVU2Hr1G098320.1	Barley	nucleus	100.0	100.0
HORVU6Hr1G011710.1	Barley	nucleus	100.0	100.0
HORVU6Hr1G066400.1	Barley	nucleus	100.0	100.0
KRG88688	Soybean	nucleus	100.0	100.0
KRG90333	Soybean	nucleus	100.0	100.0
KRG98308	Soybean	nucleus	100.0	100.0
KRH02870	Soybean	nucleus	100.0	100.0
KRH19969	Soybean	nucleus	100.0	100.0
KRH30344	Soybean	nucleus	100.0	100.0
KRH30345	Soybean	nucleus	100.0	100.0
KRH30347	Soybean	nucleus	100.0	100.0
KRH33582	Soybean	nucleus	100.0	100.0
KRH72633	Soybean	nucleus	100.0	100.0
OQU85624	Sorghum	nucleus	100.0	100.0
OQU93370	Sorghum	nucleus	100.0	100.0
Os02t0684500-00	Rice	nucleus	100.0	100.0
Os03t0119900-01	Rice	nucleus	100.0	100.0
Os04t0583600-01	Rice	nucleus	100.0	100.0
Os05t0462700-01	Rice	nucleus	100.0	100.0
Os05t0466600-01	Rice	nucleus	100.0	100.0
Os07t0549900-00	Rice	nucleus	100.0	100.0
Os09t0433600-01	Rice	nucleus	100.0	100.0
PGSC0003DMT400001072	Potato	nucleus	100.0	100.0
TraesCS1A01G262000.1	Wheat	nucleus	100.0	100.0
TraesCS4D01G345400.1	Wheat	nucleus	100.0	100.0
TraesCS6A01G260700.1	Wheat	nucleus	100.0	100.0
TraesCS6B01G078600.1	Wheat	nucleus	100.0	100.0
TraesCSU01G175900.1	Wheat	nucleus	100.0	100.0
VIT_13s0019g00800.t01	Wine grape	nucleus	100.0	100.0
Zm00001d002543_P001	Maize	nucleus	100.0	100.0
Zm00001d002546_P001	Maize	nucleus	100.0	100.0
Zm00001d005791_P001	Maize	nucleus	100.0	100.0
Zm00001d008669_P001	Maize	nucleus	100.0	100.0
Zm00001d010575_P001	Maize	nucleus	100.0	100.0
Zm00001d012439_P001	Maize	nucleus	100.0	100.0
Zm00001d021477_P001	Maize	nucleus	100.0	100.0
Zm00001d026015_P001	Maize	nucleus	100.0	100.0
Zm00001d027394_P001	Maize	nucleus	100.0	100.0
Zm00001d039733_P001	Maize	nucleus	100.0	100.0
Solyc04g011390.1.1	Tomato	nucleus	99.03	99.03
Solyc05g054610.1.1	Tomato	nucleus	99.03	99.03
Solyc06g005420.1.1	Tomato	nucleus	99.03	99.03
Solyc06g005430.1.1	Tomato	nucleus	99.03	99.03
Solyc06g072240.1.1	Tomato	nucleus	99.03	99.03
Solyc06g075830.1.1	Tomato	nucleus	99.03	99.03
Solyc06g075850.1.1	Tomato	nucleus	99.03	99.03
Solyc06g075930.1.1	Tomato	nucleus	99.03	99.03
Solyc06g075960.1.1	Tomato	nucleus	99.03	99.03
Solyc11g072860.1.1	Tomato	nucleus	99.03	99.03
Bra011929.1-P	Field mustard	nucleus	98.06	98.06
Bra038268.1-P	Field mustard	nucleus	98.06	98.06
Bra030704.1-P	Field mustard	nucleus	97.09	97.09
Solyc11g072840.1.1	Tomato	nucleus	97.09	97.09
HORVU3Hr1G087170.1	Barley	nucleus, plasma membrane	100.0	85.83
HORVU6Hr1G011540.1	Barley	nucleus, plastid	100.0	82.4
HORVU6Hr1G011780.1	Barley	nucleus	100.0	81.75
HORVU1Hr1G071760.1	Barley	nucleus, plastid	99.03	81.6
HORVU1Hr1G017830.1	Barley	nucleus	100.0	81.1
HORVU2Hr1G098340.4	Barley	nucleus	100.0	79.84
HORVU3Hr1G088160.1	Barley	nucleus	99.03	79.69
HORVU7Hr1G100410.1	Barley	nucleus	98.06	78.91
HORVU1Hr1G079440.1	Barley	nucleus, plastid	100.0	78.63
HORVU5Hr1G086630.1	Barley	nucleus	98.06	78.29
HORVU1Hr1G029090.2	Barley	nucleus	100.0	78.03
HORVU1Hr1G071210.4	Barley	nucleus	100.0	77.44
HORVU5Hr1G079130.1	Barley	nucleus	98.06	75.94
HORVU6Hr1G029210.3	Barley	nucleus, plastid	100.0	75.74
HORVU7Hr1G043300.1	Barley	nucleus	99.03	73.91
Zm00001d021422_P001	Maize	plastid	98.06	73.72
HORVU4Hr1G063260.2	Barley	nucleus	98.06	72.66
Solyc09g007590.1.1	Tomato	nucleus	48.54	72.46
HORVU3Hr1G023460.1	Barley	nucleus	98.06	72.14
Solyc09g007610.1.1	Tomato	nucleus	47.57	71.01
GSMUA_Achr11P...	Banana	plastid	100.0	68.67
HORVU6Hr1G013530.1	Barley	nucleus, plastid	100.0	68.67
HORVU1Hr1G052030.2	Barley	nucleus, plastid	100.0	68.21
HORVU2Hr1G097990.1	Barley	nucleus, plastid	98.06	66.45
KRG95810	Soybean	nucleus	100.0	66.03
HORVU4Hr1G023200.1	Barley	nucleus	98.06	61.59
HORVU5Hr1G087830.1	Barley	nucleus	100.0	60.95
HORVU2Hr1G099490.1	Barley	nucleus, plastid	100.0	57.54
HORVU5Hr1G086620.4	Barley	nucleus	98.06	55.19
HORVU1Hr1G090300.44	Barley	nucleus	100.0	53.37
OQU86251	Sorghum	nucleus	99.03	39.53

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.5	InterPro:CENP-T/H4_C	GO:GO:0000786	GO:GO:0000788	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150
GO:GO:0009414	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042393	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H4	InterPro:Histone_H4_CS	InterPro:IPR009072	UniProt:K4D9M4	PFAM:PF15511	PRINTS:PR00623
ScanProsite:PS00047	PANTHER:PTHR10484	PANTHER:PTHR10484:SF160	SMART:SM00417	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc11g066160.1
EnsemblPlants:Solyc11g066160.1.1	UniParc:UPI0000000084	SEG:seg	:	:	:

Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:K4D9M4]

Coordinates

chr11:+:51856141..51856452

Molecular Weight (calculated)

11410.2 Da

IEP (calculated)

12.005

GRAVY (calculated)

-0.524

Length

103 amino acids

Sequence
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Best Arabidopsis Sequence Match ( AT5G59970.2 )
(BLAST)

001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG

Arabidopsis Description

Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.